Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., LacI family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  152 bits (384), Expect = 9e-42
 Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 11/299 (3%)

Query: 1   MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLS--TLNNPFFVTMKDGAEAKAKELGYN 58
           M  K L  L  +  L T+    A A   + I  S   +NNP+FVTMK+  E     +G  
Sbjct: 3   MLPKTLCLLAVSITLGTAAPAFADAAKPIRIGASFQEINNPYFVTMKNALEEAGATIGAK 62

Query: 59  LIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS 118
           LI+ D+++D SK++S+VED+  +G+  +LINPTDS  V +A++ A+ + + V+ +D  A 
Sbjct: 63  LIITDARHDVSKQVSDVEDMLQKGIDILLINPTDSVGVQSAVKSAHAAGVVVVAVDAQAD 122

Query: 119 RGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV-KGS 177
            G + S + S N   G  A  ++   IG    +  L+GIA      ER  G   AV K  
Sbjct: 123 -GPLDSFVGSKNFDAGFQACEYLAKNIGDKGNIAILDGIA-VVPILERVRGCKEAVAKHP 180

Query: 178 KMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKSVMIVG 237
            +++++ Q    +R + L V EN+L A P ++ +F+ ND  +LGAL AI+ASG  V +V 
Sbjct: 181 DIKIVSIQNGKQERDQALTVTENMLQAQPTLKGIFSVNDNGSLGALSAIEASGLDVKLVS 240

Query: 238 FDGTDDGIAAVER--GQLAATVAQQP-DMIG-AIGIETADKMLKGEKVEAYIPVALKVI 292
            DG  + I A+++   +  AT AQ P D I  A+GI  A K   G +V A +PV + +I
Sbjct: 241 VDGAPEAIKAIQKPGSKFIATSAQYPRDQIRLALGIALARKW--GAQVPATLPVDITLI 297