Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., Inositol transport system sugar-binding protein (from data) from Pseudomonas simiae WCS417

 Score =  130 bits (328), Expect = 3e-35
 Identities = 83/297 (27%), Positives = 156/297 (52%), Gaps = 11/297 (3%)

Query: 5   KLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKEL----GYNLI 60
           + T L  + LL++ V+  A  +  + + +S  ++ F   +++  + +AK      G  L 
Sbjct: 6   RFTALALSMLLASGVASAADLK--IGVSMSAFDDTFLTYLREDMDKQAKSYPKGDGVQLQ 63

Query: 61  VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR---GA 117
             D++ D  K+LS VE+   + V AI++NP D+ + +N I+ A  +KIP++ ++R     
Sbjct: 64  FEDARADVVKQLSQVENFISQKVDAIIVNPVDTASTANIIKAATAAKIPLVFVNRRPDSQ 123

Query: 118 SRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV-KG 176
           +    V+ + SD+V  G++   +I  K+G    ++ L G    ++   R +G    + K 
Sbjct: 124 TLAPGVAAVTSDDVEAGKLQMQYIAEKLGGKGNIVILLGDLANNSTTNRTKGVKEVLTKY 183

Query: 177 SKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASG-KSVMI 235
             +++   Q   + R +G+ ++ + L    D QAV + NDEMA+GA  A++++G K V+I
Sbjct: 184 PGIKIEQEQTGIWLRDRGMTLVNDWLTQGRDFQAVLSNNDEMAIGAAMALKSAGKKGVLI 243

Query: 236 VGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVI 292
            G DGT DG+ A+ +G +  +  Q         +ETA KM K E +E  + +  ++I
Sbjct: 244 AGVDGTPDGLNAITKGDMTVSAFQDAKGQADKSVETARKMAKNEPIEQNVVIPFQLI 300