Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., Fructose ABC transporter, substrate-binding component FrcB from Variovorax sp. SCN45

 Score =  132 bits (333), Expect = 8e-36
 Identities = 93/308 (30%), Positives = 157/308 (50%), Gaps = 19/308 (6%)

Query: 4   KKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI--V 61
           + +  + + +L++ S +F A  Q  + +V  T  NPFFV MK+GA+ +AK+ G  L+   
Sbjct: 6   RSILAVAAMSLVAASGAFAAD-QPIIGLVTKTETNPFFVKMKEGAQEEAKKQGAKLLSGA 64

Query: 62  LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGE 121
             +  D + +++ +E++   G K ILI P+D+ A+  AI+ A    + V+ LD  A   +
Sbjct: 65  GKADGDNAGQITAMENMIAAGAKTILITPSDAKAIVPAIKKARDKGVMVIALDSPADPPD 124

Query: 122 VVSHI-ASDNVVGGEMAGHFIEAKI-GSDAKVIQLEGIAGTSAARERGEGFM-------N 172
               + A++N   G + G + +A + G  AK++ L+ + G     +R  GFM       N
Sbjct: 125 ATDALFATNNYTAGVLIGEYAKAAMAGKPAKIVALDLLPGHPVGAQRHNGFMKGFGLPAN 184

Query: 173 AVKGSKM----QLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQA 228
             K +++    +++    +  D+ K   VMEN L   PDV  V+  N+  A GA  A++ 
Sbjct: 185 DPKSNELSKAPEIVCMADSYGDQAKAQTVMENCLQKAPDVNLVYTINEPAAAGAYNALKR 244

Query: 229 SG--KSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLK-GEKVEAYI 285
           +G  K VMIV  DG   GI     G +AAT  Q P  + A+G+    +  K G+K   Y+
Sbjct: 245 AGKEKGVMIVSVDGGCQGIKDTAAGIIAATSQQYPLKMAAMGVAAGVEFAKTGKKASGYV 304

Query: 286 PVALKVIA 293
              + +IA
Sbjct: 305 DTGVTLIA 312