Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., ribose ABC transporter, periplasmic ribose-binding subunit from Pseudomonas putida KT2440

 Score =  137 bits (344), Expect = 4e-37
 Identities = 91/292 (31%), Positives = 164/292 (56%), Gaps = 13/292 (4%)

Query: 2   RMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELG--YNL 59
           R+  L  + S +L     +  A+ +  VA+V+ +L N FF TM+DGA+   K     + L
Sbjct: 8   RLLALAVISSLSLALPLSAAHAEDKPKVALVMKSLANEFFRTMEDGAKDYQKTHADEFEL 67

Query: 60  IV--LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA 117
           I   + ++ D  +++  VE +   G KA++I P DS A+ +A++ A    + V+ +D   
Sbjct: 68  IANGIKNETDTGEQIRIVEQMVNAGAKALVIAPADSKALVSAVKKAMDQGVVVINIDNRL 127

Query: 118 ------SRGEVVSHIASDNVVGGEMAGHFIEA-KIGSDAKVIQLEGIAGTSAARERGEGF 170
                 S+G  V  +  DN  G  + G ++ + K+ +  +V  +EG++ T+ A++R  GF
Sbjct: 128 DPDLLKSKGISVPFVGPDNRKGARLVGDYLASQKLKAGDQVGIIEGVSTTTNAQQRTAGF 187

Query: 171 MNAVKGSKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASG 230
            +A+  ++M++++ Q  +++  KG  V  ++L   PD++A+ A ND MALGA+ A++A+G
Sbjct: 188 KDAMDAAQMKIVSVQSGNWEIDKGNAVAASMLNEYPDLKALLAGNDSMALGAVSAVRAAG 247

Query: 231 KS--VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEK 280
           K+  V +VG+D  +     +E G++ AT+ Q        GI+ A KM+KGEK
Sbjct: 248 KTGQVQVVGYDNINAIKPMLEDGRVLATLDQAASQQAVYGIQAALKMVKGEK 299