Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., substrate-binding domain-containing protein from Paraburkholderia sabiae LMG 24235

 Score =  156 bits (395), Expect = 5e-43
 Identities = 105/301 (34%), Positives = 171/301 (56%), Gaps = 13/301 (4%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLS--TLNNPFFVTMKDGAEAKAKEL--GYN 58
           ++   T+++AA ++ + +  A A D + I  S  TLN+P+ V   +G +  A E      
Sbjct: 7   IRSAATIVAAAAVA-AYALNASADDKIVIGFSQSTLNHPWRVAQTEGNKKYAAEHYPDVK 65

Query: 59  LIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS 118
           LIV D QN+ SK+ S+VE L  +G+K ++I+P  S A++  ++ A    I V+TLDR  +
Sbjct: 66  LIVTDGQNNASKQTSDVEALMAQGIKVLMISPLTSQALTPVVKEAMNHGIKVVTLDRRVN 125

Query: 119 RGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV-KGS 177
              V SH+  +++  G  AG  I  K+    ++++L G AG S A +R +GF  A+ K  
Sbjct: 126 T-PVTSHVGPEDLPIGRQAGELIAKKLNGKGQIVELGGTAGASVAIDRDKGFREAISKYP 184

Query: 178 KMQLLASQPADFDRTKGLNVMENLLA--ANPDVQAVFAQNDEMALGALRAIQASG--KSV 233
            ++++A Q  DF R   +  ME+ +      ++ AV+A NDEMALGA++A++A+G  K V
Sbjct: 185 GIKVIAFQNCDFLREPAMKFMEDQIQRFKPGEINAVYAHNDEMALGAIQALEAAGRLKDV 244

Query: 234 MIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIA 293
           ++VG DG ++ I +V  G+L AT       +   GI+TA K+ KGE V   I +   +I 
Sbjct: 245 VVVGIDGQNNAIQSVADGKLTATFIY--PFVAPEGIQTAYKVAKGESVPKDIKLQSTMIT 302

Query: 294 K 294
           K
Sbjct: 303 K 303