Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ABC transporter substrate-binding protein from Serratia liquefaciens MT49

 Score =  117 bits (294), Expect = 3e-31
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 12/230 (5%)

Query: 48  AEAKAKELGYNLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSK 107
           ++ +A++ G  L + D+Q     ++  V     +GV AI I P  +   +  ++ A  +K
Sbjct: 45  SKQEAEKRGITLKIADAQQKQENQIKAVRSFLAQGVDAIFIAPVVATGWTPVLQEAKEAK 104

Query: 108 IPVLTLDRGASRGE---VVSHIASDNVVGGEMAGHFIEAKI-GSDAKVIQLEGIAGTSAA 163
           IPV  LDR     +     + +ASD+V  G++AG ++  ++ G    V++L+G  G S A
Sbjct: 105 IPVFLLDRMIEVNDPSLYTAAVASDSVHEGKVAGEWLVKEVAGKPCNVVELQGTVGASVA 164

Query: 164 RERGEGFMNAV-KGSKMQLLASQPADFDRTKGLNVMENLLAA---NPDVQAVFAQNDEMA 219
             R +GF + +   + ++++ SQ  DF R+KG  VME+ + A     ++ AV+A ND+MA
Sbjct: 165 LNRKKGFADGIASAANVKIIRSQSGDFTRSKGKEVMESFIKAEQNGKNICAVYAHNDDMA 224

Query: 220 LGALRAIQAS----GKSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIG 265
           +GA++AI+ +    G  + IV  DG  D   A+  G+  ATV   P+M G
Sbjct: 225 IGAIQAIKEAGLKPGSQIKIVSIDGVPDIFKAMMNGEANATVELTPNMAG 274