Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., D-allose transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  157 bits (397), Expect = 3e-43
 Identities = 107/298 (35%), Positives = 160/298 (53%), Gaps = 16/298 (5%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62
           M K     S  L+   +S  A A    A+VL TL+NPF+V MK G E +AK LG ++ + 
Sbjct: 1   MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIF 60

Query: 63  --DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASR- 119
              S+ D   +L   EDL+ +  K I   P  S  +   +  A +  I ++ LD      
Sbjct: 61  ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMD 120

Query: 120 ------GEVVSHIASDNVVGGEMAGHFIEAKIGSDA-KVIQLEGIAGTSAARERGEGFMN 172
                 G V + + +DNV  G     FI  K+G++  +V  +EG AG ++   R  G   
Sbjct: 121 NLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATE 180

Query: 173 AVK-GSKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGK 231
           A K  S+++L+ASQPAD+DR K L+V  N+L  NP+++A++  ND MA+G  +A+  +GK
Sbjct: 181 AFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGK 240

Query: 232 S--VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPV 287
           +  V++VG DG  +    VE GQ+ ATVAQ P  IGA G++    M+  EK    IP+
Sbjct: 241 TGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKL---MVDAEKSGKVIPL 295