Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC-type sugar transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  132 bits (331), Expect = 1e-35
 Identities = 101/302 (33%), Positives = 156/302 (51%), Gaps = 17/302 (5%)

Query: 1   MRMKKLTTLISAALLSTSVSFVAQAQD--TVAIVLSTLNNPFFVTMKDGAEAKAKELG-- 56
           MR+K L T + A  L  +  F AQA+D  ++ + +  L NPFFV +  GAE +A++L   
Sbjct: 1   MRLKPLVTALCAGALLAATPF-AQAKDLKSIGVTVGDLANPFFVQITKGAELEARKLAGD 59

Query: 57  -YNLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR 115
              + ++ S  D  ++++ +++     V  I++N  DS  +  A++ A  + I V+ +D 
Sbjct: 60  NVKVTLVSSGYDLGQQVAQIDNFIAAKVDMIILNAADSKGIGPAVKRAKDAGIVVVAVDV 119

Query: 116 GASRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVK 175
            A   +    I SDN   GEMA  +I  ++     V+ + G    SA + R EG     K
Sbjct: 120 AAEGADAT--ITSDNTQAGEMACKYITDRLKGKGNVVIING-PPVSAVQNRVEGCQTEFK 176

Query: 176 GS-KMQLLA-SQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGA-LRAIQASGKS 232
               +++L+ +Q A   R  GL VM +LLAANP +  VFA ND  A+GA L A QA    
Sbjct: 177 KHLDIKVLSDNQNAKGSREGGLEVMTSLLAANPKIDGVFAINDPTAIGADLAAKQAQRNE 236

Query: 233 VMIVGFDGTDDGIAAVER--GQLAATVAQQPDMIGAIGIETADKMLKGE---KVEAYIPV 287
             IVG DG+ DG  A++R      AT AQ P ++ A  +E    +L+G+   K    IPV
Sbjct: 237 FFIVGVDGSPDGEEALKRENSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPKAPVLIPV 296

Query: 288 AL 289
            +
Sbjct: 297 TM 298