Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., ABC-type sugar transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  412 bits (1058), Expect = e-120
 Identities = 209/295 (70%), Positives = 253/295 (85%), Gaps = 1/295 (0%)

Query: 1   MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI 60
           M MKKL TL+SA  LS +VS  A A+DT+A+V+STLNNPFFV++KDGA+ +A +LGYNL+
Sbjct: 1   MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60

Query: 61  VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120
           VLDSQN+P+KEL+NV+DLTVRG K +LINPTDSDAV NA+++AN++KIPV+TLDR AS+G
Sbjct: 61  VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAKIPVITLDRQASKG 120

Query: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQ 180
           EVVSHIASDNV+GG++AG +I  K G  AKVI+L+GIAGTSAARERGEGF  AV   K  
Sbjct: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180

Query: 181 LLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS-VMIVGFD 239
           +LASQPADFDRTKGLNVM+NLL A+PDVQAVFAQNDEMALGALRA+Q +GKS VM+VGFD
Sbjct: 181 VLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD 240

Query: 240 GTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294
           GT DG  AV  G+LAAT+AQ P+ IGA G+ETADK+LKGEKV+A  PV LK++ K
Sbjct: 241 GTPDGEKAVNDGKLAATIAQLPEQIGATGVETADKVLKGEKVQAKYPVDLKLVIK 295