Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., ABC-type sugar transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  154 bits (390), Expect = 2e-42
 Identities = 92/267 (34%), Positives = 158/267 (59%), Gaps = 13/267 (4%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLN--NPFFVTMKDGAEAKAKELGYNLI 60
           MKKL  +++A +  TS + +A+ +    IV ST N   PF V M+  A   AKE+G  L 
Sbjct: 1   MKKL--IVAALIAMTSGAALAENEQ---IVFSTPNLAMPFEVHMQRTAVKAAKEMGVKLQ 55

Query: 61  VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120
           VLD Q    K+++++E+   RG +  +++P D +AVS+A+     +K+P++TLDR     
Sbjct: 56  VLDGQGSSPKQVADLENAITRGAQGFIVSPNDVNAVSSAVDEIQDAKLPIVTLDRSVDSQ 115

Query: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVK--GSK 178
           + V H  ++N  GG+  G F++ K  + A +I L G  G+S+  ER +G  +++K  G K
Sbjct: 116 KKVPHFGANNYKGGQAVGDFVKTKFPNGADIILLTGQPGSSSNIERTKGIRDSLKAGGDK 175

Query: 179 MQLLASQPADFDRTKGLNVMENLLAANPD-VQAVFAQNDEMALGALRAIQASG---KSVM 234
            +++A Q  ++ R++G+ ++E++L + P   Q + + ND+MALGA+ A+Q+ G     ++
Sbjct: 176 YKIVADQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQSQGVKPGEIL 235

Query: 235 IVGFDGTDDGIAAVERGQLAATVAQQP 261
           + GFD   + +A V  G LA T  Q+P
Sbjct: 236 VTGFDAVPEALARVRDGWLAVTADQRP 262