Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., galactofuranose ABC transporter substrate-binding protein YtfQ from Escherichia coli ECRC62

 Score =  112 bits (281), Expect = 8e-30
 Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 12/230 (5%)

Query: 48  AEAKAKELGYNLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSK 107
           A+++A++ G  L + D Q     ++  V     +GV AI I P  +      ++ A  ++
Sbjct: 45  AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAE 104

Query: 108 IPVLTLDRG---ASRGEVVSHIASDNVVGGEMAGHFIEAKI-GSDAKVIQLEGIAGTSAA 163
           IPV  LDR      +   ++ + +DN++ G++ G ++  ++ G    V++L+G  G S A
Sbjct: 105 IPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA 164

Query: 164 RERGEGFMNAVKGS-KMQLLASQPADFDRTKGLNVMENLLAA---NPDVQAVFAQNDEMA 219
            +R +GF  A+K +  ++++ SQ  DF R+KG  VME+ + A     ++  V+A ND+M 
Sbjct: 165 IDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMV 224

Query: 220 LGALRAIQAS----GKSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIG 265
           +GA++AI+ +    GK ++    DG  D   A+  G+  A+V   P+M G
Sbjct: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMIDGEANASVELTPNMAG 274