Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., Ribose import binding protein RbsB from Escherichia fergusonii Becca

 Score =  135 bits (339), Expect = 1e-36
 Identities = 96/291 (32%), Positives = 156/291 (53%), Gaps = 9/291 (3%)

Query: 3   MKKLTTLISAALLSTSV---SFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNL 59
           MK +  L SA L+S ++   S +A+     A +L T  +PF++ + +  + +AK+   NL
Sbjct: 1   MKNIKLLGSAMLVSLALFSQSSLAKEYKIGASLL-TQQHPFYIDLANAMKEEAKKDNVNL 59

Query: 60  IVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASR 119
            V  +  D +K+LS+VED   + V AI+I+P DS  V  AI  A+++ IPV+T+D  A  
Sbjct: 60  SVSIANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEG 119

Query: 120 GEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGS-K 178
             VVSH+A+DN  GG  AG  +  K+      + +       +   R +GF   +  +  
Sbjct: 120 VPVVSHVATDNYAGGVEAGKLM-GKLLHGKGTVAIISYPALQSVVARVDGFKKGLSDTPD 178

Query: 179 MQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGA-LRAIQASGKSVMIVG 237
           ++++A QP    R + L   +N++ AN ++  +F   D+ AL A + A  A   ++ I+G
Sbjct: 179 IKIVAEQPG-ITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIG 237

Query: 238 FDGTDDGIAAVERGQ-LAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPV 287
           FDG  +   AV+  +  AA + Q PD +GA  I+ A   L G+ VE  IPV
Sbjct: 238 FDGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPV 288