Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ABC transporter substrate-binding protein from Dickeya dianthicola ME23

 Score =  111 bits (277), Expect = 2e-29
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 12/230 (5%)

Query: 48  AEAKAKELGYNLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSK 107
           A+ +AK  G NL + D+Q     ++  V     +GV AI I P  +      ++ A  +K
Sbjct: 45  AKEQAKTRGINLKIADAQQKQENQIKAVRSFIAQGVDAIFIAPVVATGWEPVLKEAKEAK 104

Query: 108 IPVLTLDRGASRGE---VVSHIASDNVVGGEMAGHF-IEAKIGSDAKVIQLEGIAGTSAA 163
           IPV+ LDRG    +    ++ + +DN+  G + G + I+ + G    V+QLEG  G S A
Sbjct: 105 IPVILLDRGIDVKDDSLYLTTVRADNIKEGALIGDWLIKNENGKTCNVVQLEGTVGASVA 164

Query: 164 RERGEGFMNAV-KGSKMQLLASQPADFDRTKGLNVMENLLAA---NPDVQAVFAQNDEMA 219
            +R +GF  A+ K   ++++ SQ  DF R+ G  VME+ + +     ++  VFA ND+M 
Sbjct: 165 IDRKKGFEEAIAKTPNIKIIRSQSGDFTRSGGKQVMESFIKSENNGKNICMVFAHNDDMV 224

Query: 220 LGALRAIQAS----GKSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIG 265
           +GA++AI+ +    GK ++    DG  D   A+   +   +V   P+M G
Sbjct: 225 IGAIQAIKEAGLKPGKDILTGSIDGVPDIFRAMLASEANVSVELTPNMAG 274