Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., sugar ABC transporter substrate-binding protein from Dickeya dianthicola ME23

 Score =  165 bits (417), Expect = 1e-45
 Identities = 101/267 (37%), Positives = 162/267 (60%), Gaps = 10/267 (3%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLN--NPFFVTMKDGAEAKAKELGYNLI 60
           MKK+T +++AA+  T  S +A AQ+   IV ST N   PF V M+  A   AKELG NL 
Sbjct: 1   MKKIT-IMAAAMAFTMSSGLALAQNE-QIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQ 58

Query: 61  VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120
           VLDSQ    K+++++E+   RG +  +++P D +AVS A+     +K+PV+TLDR     
Sbjct: 59  VLDSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTD 118

Query: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVK--GSK 178
           + V H  ++N  GG+    F++A+  + A ++ L G  G+S+  ER +G  + +K  GSK
Sbjct: 119 KKVPHFGANNYKGGQAIADFVKARFPNGADIVLLTGQPGSSSNIERTQGIRDGLKAGGSK 178

Query: 179 MQLLASQPADFDRTKGLNVMENLLAANPD-VQAVFAQNDEMALGALRAIQASG---KSVM 234
            +L+A Q  ++ R++G+ ++E++L + P   Q + + ND+MALGA+ A+Q+ G     VM
Sbjct: 179 YRLVADQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQSQGLKPGEVM 238

Query: 235 IVGFDGTDDGIAAVERGQLAATVAQQP 261
           + GFD   + +A V  G L+AT  Q+P
Sbjct: 239 VTGFDAVPEALARVRDGWLSATADQRP 265