Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., D-ribose ABC transporter substrate-binding protein from Dickeya dadantii 3937

 Score =  132 bits (333), Expect = 8e-36
 Identities = 89/282 (31%), Positives = 153/282 (54%), Gaps = 6/282 (2%)

Query: 5   KLTTLISAALLSTSVSFVAQAQD--TVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62
           KL +++  A +++++S  A A +  T+ I++++L+NP++ +   GA+ KA+ELGYN  VL
Sbjct: 2   KLRSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYNTTVL 61

Query: 63  DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEV 122
               D  K+   ++    + V+ I+++  DS A   AI+ A  + IPV+ ++R     +V
Sbjct: 62  SHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKSAGIPVVLINREIPVDDV 121

Query: 123 -VSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV-KGSKMQ 180
            +  I  +N   G    +    K+G   K  +L      +    R + F   + +  +M 
Sbjct: 122 ALVQITHNNFQAGSDVANVFVGKMGEKGKYAELTCSLADNNCVTRSKSFHQVLDQYPEMT 181

Query: 181 LLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS-VMIVGFD 239
            +A Q A      G  +M+++L A+PDV+ V   N  +ALGA+ A++A+G++ V++VG D
Sbjct: 182 SVARQDAKGTLLDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAAGRNDVVVVGID 241

Query: 240 GTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKML-KGEK 280
           G++D   AV+ G L ATV  Q   I A G+   D  L KGEK
Sbjct: 242 GSNDERDAVKEGSLKATVMLQAQAIAAQGVTDLDNYLRKGEK 283