Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Ribose import binding protein RbsB from Azospirillum sp. SherDot2

 Score =  132 bits (331), Expect = 1e-35
 Identities = 86/301 (28%), Positives = 157/301 (52%), Gaps = 9/301 (2%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKEL-GYNLIV 61
           MK+  +   A+ ++ +      A   +A+V+ T+N+ F+  ++ GA    KE  GY +  
Sbjct: 1   MKRFVSACLASAVALAAGSALAADKEIAVVVKTVNSTFWQNVQKGASTAQKEADGYTMTF 60

Query: 62  LD--SQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR---G 116
               +++  + +++ VE+   R V  I++ P+D DA+   ++ A  +KIPV+ +D     
Sbjct: 61  QGPAAESAIADQVNMVENAVNRKVAGIVLAPSDPDALVPVLKKAWEAKIPVVLIDSPVSD 120

Query: 117 ASRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKG 176
           A +    + +++DNV  GE+    +  K+G+  K+  +  +AG  +   R  GF   +K 
Sbjct: 121 AGKQYYQAMLSTDNVKAGELCAKALIDKVGTSGKIAVMSYVAGAGSEIGRVGGFTKYIKD 180

Query: 177 -SKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS--V 233
            SK++++    +       LN   ++LAANPD++ +F  N+  A+G  RA+  SGK+  +
Sbjct: 181 HSKLEIVGPFYSQSQMATALNQTTDVLAANPDLKGIFGANEPTAIGMGRALAQSGKAGHI 240

Query: 234 MIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIA 293
             VGFDG  D    V+ G L A   Q    +G +G++TA K+ K EKVE  +   + ++ 
Sbjct: 241 AAVGFDGNQDLQGFVKDGTLEAIAVQGSYQMGYLGVQTAVKLTKREKVEKALDTGVVLVT 300

Query: 294 K 294
           K
Sbjct: 301 K 301