Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

 Score =  129 bits (324), Expect = 8e-35
 Identities = 90/296 (30%), Positives = 159/296 (53%), Gaps = 20/296 (6%)

Query: 12  AALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKEL-GYNLIVLDSQNDPSK 70
           AA+L+T  S       TV + ++  ++ F   +++G    +K + G +L V D+QND  K
Sbjct: 11  AAMLATGAS-----AQTVGVSMALFDDNFLTVLRNGMIDYSKGMNGVSLQVEDAQNDVGK 65

Query: 71  ELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA----SRGEVVSHI 126
           +LS V++    GV AI++NP D+DA     + A  + IP++ ++R      S  +  + +
Sbjct: 66  QLSQVQNFVAAGVDAIIVNPVDTDATVALSQAAAAAGIPLVYVNRQPVNLDSLPDKQAFV 125

Query: 127 ASDNVVGGEMAGH----FIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKG---SKM 179
           ASD    G +        ++    +DAK + + G     AAR R +   + V     S +
Sbjct: 126 ASDEKQSGTLQTQEVCRLLKQAGKTDAKAVVMMGELSNQAARMRTQDIKDVVATPDCSFI 185

Query: 180 QLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGK---SVMIV 236
           +L+  Q A++ RT+G ++M N L+A  +  AV + NDEMA+GA+++++A+G+   SV+I 
Sbjct: 186 KLVEEQSANWSRTQGSDLMTNWLSAGVEFDAVISNNDEMAIGAIQSLKAAGRSMDSVIIA 245

Query: 237 GFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVI 292
           G D T D +AA+  G L  +V Q     G   ++ A K+ KGE ++  + V  +++
Sbjct: 246 GIDATQDALAAMAAGDLDVSVFQNAAGQGKGALDAALKLAKGETIDKKVFVPFELV 301