Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., ribose ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  126 bits (317), Expect = 6e-34
 Identities = 90/292 (30%), Positives = 145/292 (49%), Gaps = 12/292 (4%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62
           M+K    ++ A+     S V+    TV        + +        + +A++ G  L   
Sbjct: 1   MRKALATVTVAVSLCLASSVSAKSLTVGFSQIGSESGWRAAETTVTKQQAEKRGVTLKFA 60

Query: 63  DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGE- 121
           D+Q     ++  V     +GV AILI P  +      ++ A   KIPV+ LDR     + 
Sbjct: 61  DAQQKQENQIKAVRGFIAQGVDAILIAPVVATGWDAVLKEAKEEKIPVILLDRQIEAPDD 120

Query: 122 -VVSHIASDNVVGGEMAGHFIEAKIGS-DAKVIQLEGIAGTSAARERGEGFMNAVKGSK- 178
             ++ + SD V  G++AG ++   +GS D KV++L+G  G+S A  R +GF  A+   K 
Sbjct: 121 LYLTAVTSDQVHEGKVAGDWLVKDVGSKDCKVVELQGTTGSSPAINRKKGFEEAIASHKN 180

Query: 179 MQLLASQPADFDRTKGLNVMENLLAA---NPDVQAVFAQNDEMALGALRAIQAS----GK 231
           ++++ SQ  DF RTKG  VME+ + A     D+ AV+A ND+MA+GA++AI+ +    G 
Sbjct: 181 IKIVRSQTGDFTRTKGKEVMESFIKAEGGGKDICAVYAHNDDMAVGAIQAIKEAGLKPGT 240

Query: 232 SVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283
            + +V  D   D   A+  G+  ATV   PDM G    +  +  LK +K  A
Sbjct: 241 DIKVVSIDAVPDIFKAMAAGEANATVELTPDMAGP-AFDALEAYLKDKKAPA 291