Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

 Score =  144 bits (362), Expect = 3e-39
 Identities = 93/302 (30%), Positives = 169/302 (55%), Gaps = 12/302 (3%)

Query: 3   MKKLTT-LISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIV 61
           MKK+TT L+++A+   SVS V   +  +A+++ T+N+ F+  ++ GA+A  K    N + 
Sbjct: 1   MKKITTALLTSAIALWSVSTVQAGE--IAVIVKTVNSTFWQNVQKGADAAMKNSSGNTMT 58

Query: 62  LD---SQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS 118
                +++  + +++ VE+   R V  I++ P+D DA+  A++ A  ++IPV+ +D   +
Sbjct: 59  FQGPAAESAIADQVNMVENAINRKVAGIVLAPSDPDALVPAVKKAWEARIPVVLIDSQLA 118

Query: 119 RGE---VVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVK 175
           +G      S +A+DN   GE+A   +  K+G++ K+  +  +AG  +   R  GF + ++
Sbjct: 119 KGSEQYYQSFLATDNKKAGELAAQALIDKVGTEGKIAVMSYVAGAGSEIGRVGGFTDYIQ 178

Query: 176 -GSKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS-- 232
             SK+Q++    +       LN   ++LAAN D++ +F  N+  A+G  RA+  SGK+  
Sbjct: 179 MHSKLQIVGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGVGRALAQSGKAGK 238

Query: 233 VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVI 292
           V+ +GFDG  D  + V+ G LA  V Q    +G  G+ET  K++  EKVE ++   + V+
Sbjct: 239 VIAMGFDGNQDLQSFVKDGTLAGIVVQGSYQMGEKGVETVTKLINKEKVEKFVDTGVVVV 298

Query: 293 AK 294
            K
Sbjct: 299 TK 300