Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., arabinose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  224 bits (570), Expect = 3e-63
 Identities = 122/311 (39%), Positives = 191/311 (61%), Gaps = 9/311 (2%)

Query: 19  NRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLV 78
           N++K L  +W++    L+A L + V+ +    NF +  N+  +    S   I A  M   
Sbjct: 15  NQRKFLD-DWVM----LLAALSIFVLSALFIDNFLSPLNMRGLGLAISTVGIAACTMLFC 69

Query: 79  ILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQA 138
           + +   DLSVGSV+A  G  A  ++     V++ V  AL  G  +G I+GI+IAK ++ A
Sbjct: 70  LASGHFDLSVGSVIACAGVVAGIVIRDTDSVVLGVSAALAMGLVVGLINGIVIAKLRINA 129

Query: 139 FIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGA 198
            IATL TM ++RG+  ++++G+ +  G  D  + F  FG G  LG+PVP+ + V+ F   
Sbjct: 130 LIATLATMQIVRGLAYIFSNGKAV--GVMD--EGFFVFGNGQLLGVPVPIIITVLCFVFF 185

Query: 199 WYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQ 258
            +LLN+T +GR   A+GGN+ A  L+G+NVDR KI ++A+ GL+ ALAG+I+ SR++S Q
Sbjct: 186 GWLLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGLIGALAGVILASRMTSGQ 245

Query: 259 PTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAK 318
           P  G G+EL  I+A VLGG SL GG G I   + G LI+  + NA+NL ++ ++YQ + +
Sbjct: 246 PMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIR 305

Query: 319 AVVILLAVLVD 329
             ++LLAV++D
Sbjct: 306 GSILLLAVIID 316