Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., ribose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  285 bits (729), Expect = 1e-81
 Identities = 155/331 (46%), Positives = 210/331 (63%), Gaps = 4/331 (1%)

Query: 1   MKQGYSMSTRTMTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLN 60
           M+QG  ++T   T  +S  R  L            + L+ + +V+   +  F T  NL N
Sbjct: 1   MQQGAQVNTSISTGDSSRLRLNLARLVRSPAFYPFVGLVVVTLVMILASDTFLTASNLSN 60

Query: 61  ILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAG 120
           I RQ S+NAIIAVGMT VILT GIDLSVG V+AL G   A L+   +P  +A+   +L G
Sbjct: 61  IARQVSINAIIAVGMTCVILTGGIDLSVGPVMALSGTLTAGLMVAGLPPGLAIGAGMLIG 120

Query: 121 AALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGY 180
            A G  +G+ +A   +   I TL TM + RG+ ++YTDG PIS       D FA+FG   
Sbjct: 121 VAFGIGNGLFVAYLHMPPIIVTLATMGIARGLGLMYTDGYPIS----GLPDWFAFFGRES 176

Query: 181 TLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICG 240
             GI VP+ +M++ +  A+ LL HTR GRY+YA+GGNE A RLSG+   R K+ VY I G
Sbjct: 177 LFGIQVPILIMLLTYLVAYVLLQHTRIGRYIYAIGGNEEAVRLSGVRAARFKLLVYGISG 236

Query: 241 LLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFL 300
           L AA+AG+++TSRL S QP AG+ +ELDAIAAVVLGG S+ GG+G I+GTL+GA+++G L
Sbjct: 237 LTAAIAGLVLTSRLMSGQPNAGVSFELDAIAAVVLGGASIAGGRGVIVGTLLGAMLLGVL 296

Query: 301 NNALNLLDVSSYYQMIAKAVVILLAVLVDNK 331
           NN LN+L VS Y Q + K  +ILLA+ +  +
Sbjct: 297 NNGLNMLGVSPYVQSVIKGGIILLAIFISRQ 327