Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., xylitol ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  283 bits (724), Expect = 4e-81
 Identities = 148/294 (50%), Positives = 198/294 (67%), Gaps = 4/294 (1%)

Query: 36  IALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALC 95
           +  + L VV++F +  F T  N ++ILRQTS+N I+AVGMT VILT GIDLSVGS+LA  
Sbjct: 29  LVFILLCVVMAFSSEYFMTWRNWMDILRQTSINGILAVGMTYVILTKGIDLSVGSILAFA 88

Query: 96  GAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMV 155
           G  +A +      +L AV   + AGA LG ++G ++A   +  F+ATL  +++ RG+T +
Sbjct: 89  GLCSAMVATQGYGLLAAVSAGMFAGAMLGVVNGFMVANLSIPPFVATLGMLSIARGMTFI 148

Query: 156 YTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVG 215
             DG PI    TD  D +   G G    I VP+ +  VV    W +L +T +GRYVYAVG
Sbjct: 149 LNDGSPI----TDLPDAYLALGIGKIGPIGVPIIIFAVVALIFWMVLRYTTYGRYVYAVG 204

Query: 216 GNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVL 275
           GNE + R SGI V +V   VY + GLLA LAG+++++R +SA P AG+ YELDAIAAVV+
Sbjct: 205 GNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLSARTTSALPQAGVSYELDAIAAVVI 264

Query: 276 GGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVD 329
           GGTSL GG G I+GTL GAL+IG +NN LNLL VSSYYQ +AK ++I+ AVL+D
Sbjct: 265 GGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGLIIVFAVLID 318