Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., arabinose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  223 bits (568), Expect = 5e-63
 Identities = 120/319 (37%), Positives = 188/319 (58%), Gaps = 4/319 (1%)

Query: 11  TMTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAI 70
           T  N     RK L  +  L     L+A + + ++ + L  NF +  N+  +    S   I
Sbjct: 3   TQHNVLPTARKPLDLRALLDNWAMLLAAVSIFLLCALLIDNFLSPLNMRGLGLAISTVGI 62

Query: 71  IAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGII 130
            A  M   + +   DLSVGSV+A  G  AA ++     V++ +  ALL G  +G I+GI+
Sbjct: 63  AACTMLFCLASGHFDLSVGSVIACAGVVAAIVMRDTDSVMLGIGAALLMGLMVGLINGIV 122

Query: 131 IAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWL 190
           IAK +V A I TL TM ++RG+  ++ +G+ +      + D F  FG G  +G+PVP+ +
Sbjct: 123 IAKLRVNALITTLATMQIVRGLAYIFANGKAVGV----SQDQFFVFGNGQLMGVPVPILI 178

Query: 191 MVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIV 250
            ++ F    +LLN+T +GR   A+GGN  A  L+G+NVDR KI ++A+ G++ ALAG+I+
Sbjct: 179 TILCFLFFGWLLNYTTYGRNTMAIGGNPEAALLAGVNVDRTKILIFAVHGVIGALAGVIL 238

Query: 251 TSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVS 310
            SR++S QP  G G+EL  I+A VLGG SL GG G I   + G LI+  + NA+NL ++ 
Sbjct: 239 ASRMTSGQPMIGQGFELTVISACVLGGVSLSGGVGMIRHVIAGVLILAIIENAMNLKNID 298

Query: 311 SYYQMIAKAVVILLAVLVD 329
           ++YQ + +  ++LLAV++D
Sbjct: 299 TFYQYVIRGSILLLAVVID 317