Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  215 bits (547), Expect = 1e-60
 Identities = 121/303 (39%), Positives = 180/303 (59%), Gaps = 11/303 (3%)

Query: 35  LIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94
           +I L+ L +  + LN +F T+DN +N+L +T+   IIAVGM  VI++ GIDLSVGS+ AL
Sbjct: 38  VIGLVLLCIAGTLLNGDFATLDNAMNVLTRTAFIGIIAVGMCFVIISGGIDLSVGSMAAL 97

Query: 95  CGAFAATLV-----AMEVPVLVAVPTALLA---GAALGAISGIIIAKGKVQAFIATLVTM 146
                   +     A   P+L  V  A+LA   GA  G   G++I KG+++ FI TL T+
Sbjct: 98  IAGSVIMFINWAGPASGSPLLAVVMGAVLAIVLGAVFGLAHGLLITKGRIEPFIVTLGTL 157

Query: 147 TLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTR 206
            + R     + DG  ++    D +D +A        GIPVPVW+ V+V      +LN T 
Sbjct: 158 GIFRAYLTYFADGGALTLD-NDLSDLYAPVYYASLAGIPVPVWVFVIVAIIGGVILNRTA 216

Query: 207 FGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYE 266
           +GRYV A+G NE   R + ++VDRVKI  Y + G+   +A ++   RL SA PT G+ +E
Sbjct: 217 YGRYVQAIGSNEQVARYAAVDVDRVKILTYVLLGVCVGIATLLYVPRLGSASPTTGLLWE 276

Query: 267 LDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYY--QMIAKAVVILL 324
           L+AIAAV++GGT+L GG G I GT++GA+++  ++N LNL  + S Y    +   V+I++
Sbjct: 277 LEAIAAVIVGGTALKGGAGSITGTVVGAILLSVISNILNLTSIISVYLNAAVQGFVIIIV 336

Query: 325 AVL 327
           A L
Sbjct: 337 AFL 339