Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  220 bits (560), Expect = 4e-62
 Identities = 118/300 (39%), Positives = 177/300 (59%), Gaps = 9/300 (3%)

Query: 35  LIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94
           L+ L+ L +  + LN  F TVDN +N+L +T+   IIAVGM  VI++ GIDLSVGS+ AL
Sbjct: 28  LLGLVLLCIAGTLLNREFATVDNAMNVLTRTAFIGIIAVGMCFVIISGGIDLSVGSMAAL 87

Query: 95  CGAFAATLVAMEVP--------VLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTM 146
                  L+    P        V+V +  A+L GA  G   G+++ +G+++ FI TL T+
Sbjct: 88  IAGVVILLMNRIAPLGWPPVAVVMVGMAAAVLLGALFGLAHGLLVTRGRIEPFIVTLGTL 147

Query: 147 TLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTR 206
            + R     + DG  ++      AD +     G  LG+PVPVW+ V+V      LLN T 
Sbjct: 148 GIFRAYLTYFADGGALALD-NALADAYGPVYYGSLLGVPVPVWIFVLVALAGALLLNRTA 206

Query: 207 FGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYE 266
           +GRYV A+G NE   R + ++VDR+K+  Y + G+   +A ++   RL SA PT G+ +E
Sbjct: 207 YGRYVQAIGSNEQVARYAAVDVDRIKVLTYTLLGVCVGIATLLYVPRLGSASPTTGLLWE 266

Query: 267 LDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAV 326
           L+AIAAV++GGT+L GG G I GT+IGA+++  ++N LNL  + S Y   A    +++AV
Sbjct: 267 LEAIAAVIVGGTALRGGAGSIGGTVIGAILLSVISNILNLTSIISVYLNAAVQGFVIIAV 326