Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., ABC transporter permease from Pantoea agglomerans CFBP13505 P0401

 Score =  246 bits (628), Expect = 6e-70
 Identities = 141/343 (41%), Positives = 209/343 (60%), Gaps = 16/343 (4%)

Query: 1   MKQGYSMSTRTMTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLN 60
           MK   S++  T+      +R+ +L    L++ ++ IAL+ +V   +   P+F    +L+ 
Sbjct: 1   MKSNNSVALTTLPAKAFSSRESILLL--LLKLRTFIALILIVGFFAITVPDFLATGSLVI 58

Query: 61  ILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEV-----------PV 109
           +++  ++NA +A+G+T VI+TAGIDLS+G+ L LCG  A  L+   +            V
Sbjct: 59  MVKHIAINAFLALGITFVIITAGIDLSIGATLGLCGMIAGWLITKGIVLPMFGIAIFPSV 118

Query: 110 LVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGR--PISTGFT 167
            V VP  LL GA +GA +G II +  V  FI TL TM +LRG  M+ + G   P   G  
Sbjct: 119 WVIVPVVLLIGALIGAGNGWIITRYNVAPFICTLGTMYILRGAAMLTSGGETFPGLQGNP 178

Query: 168 DTADT-FAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGI 226
              +T F   G G  LG+P  +W+MVV+     Y+     FGR VYA+G NE A  LSG+
Sbjct: 179 LLGNTGFDRIGAGTFLGLPYAIWMMVVLALVIAYIARRLPFGRQVYAIGDNERAAELSGV 238

Query: 227 NVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGR 286
              +VKI VY + G  AA+AGI+V+S+L ++ P  G  +E++AIAAVVLGGTSL GG+G 
Sbjct: 239 KTRQVKILVYTLSGFCAAIAGIVVSSQLVASHPANGTAFEMNAIAAVVLGGTSLAGGRGT 298

Query: 287 IMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVD 329
           I+GTLIGA +IGFL + L ++ VS ++QM+ K +VI++AV++D
Sbjct: 299 ILGTLIGAFVIGFLADGLIMMGVSEFWQMVIKGIVIIIAVIID 341