Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., ABC transporter permease from Pantoea agglomerans CFBP13505 P0401

 Score =  243 bits (621), Expect = 4e-69
 Identities = 132/322 (40%), Positives = 200/322 (62%), Gaps = 13/322 (4%)

Query: 21  KKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVIL 80
           +K L   +L++ ++ IALL +V   S + PNF T  NLL + +  ++  ++A+GMTLVIL
Sbjct: 3   QKYLLYMYLLKARTFIALLIVVGFFSVMVPNFLTPSNLLIMTQHVAITGLLAIGMTLVIL 62

Query: 81  TAGIDLSVGSVLALCGAFAATLVAMEVPV------LVAVPTALLA----GAALGAISGII 130
           T GIDLSVG+V  +CG  A  L+   +P+       + VP  +L     G  +G I+G +
Sbjct: 63  TGGIDLSVGAVAGICGMVAGALLTNGIPLWGGNTLFLNVPEVILVVAIFGVLVGLINGTV 122

Query: 131 IAKGKVQAFIATLVTMTLLRGVTMVYTDGRPIST--GFTDTADT-FAWFGTGYTLGIPVP 187
           I +  V  FI TL  M + RG  +++ DG   +   G     +T F+  G+G  LG+ +P
Sbjct: 123 ITRLGVAPFICTLGMMYVARGAALLFNDGGTYANLVGVPALGNTGFSLLGSGTVLGVYLP 182

Query: 188 VWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAG 247
           +WLM+       YL   T  GRY+YA+GGNESA RL+G+ + +VK+ VYA  GL A L G
Sbjct: 183 IWLMLGFLLLGLYLTRKTPLGRYIYAIGGNESAARLAGVPIIKVKVFVYAFSGLCAGLVG 242

Query: 248 IIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLL 307
           ++V S+L +A P  G  +E+DAI A VLGGT+L GG+GR+ G++IGA +I FL + + ++
Sbjct: 243 LVVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVSGSIIGAFVIVFLADGMVMM 302

Query: 308 DVSSYYQMIAKAVVILLAVLVD 329
            VS ++QM+ K +VI+ AV++D
Sbjct: 303 GVSDFWQMVIKGLVIVTAVVID 324