Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  462 bits (1190), Expect = e-135
 Identities = 233/319 (73%), Positives = 275/319 (86%)

Query: 15  TTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVG 74
           T + + ++  +K WL+EQKSLIALL L+ +VS L+PNFFTV+NL NIL+QTSVNAI+AVG
Sbjct: 3   TQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVG 62

Query: 75  MTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKG 134
           MTLVILT+GIDLSVGS+LAL GA AA++V +EV  LVAV  AL  GAA+GA++G+I+AKG
Sbjct: 63  MTLVILTSGIDLSVGSLLALTGAVAASIVGVEVNALVAVAAALALGAAIGAVTGVIVAKG 122

Query: 135 KVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVV 194
           +VQAFIATLV M LLRGVTMVYTDG P++TGFTD AD F WFG G  LG+P PVW+M +V
Sbjct: 123 RVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFTDNADLFGWFGIGRPLGVPTPVWIMAIV 182

Query: 195 FAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRL 254
           F  AWY+L+HTR GRY+YA+GGNE+ATRLSGI+V +VKI VY++CGL A+LAGII  +RL
Sbjct: 183 FIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSKVKIIVYSLCGLTASLAGIIEVARL 242

Query: 255 SSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQ 314
           SSAQPTAG GYELDAIAAVVLGGTSL GGKGRI+GTLIGALI+GFLNN LNLL VSSYYQ
Sbjct: 243 SSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQ 302

Query: 315 MIAKAVVILLAVLVDNKNK 333
           MI KAVVILLAVLVDNK +
Sbjct: 303 MIVKAVVILLAVLVDNKKQ 321