Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) from Escherichia coli BW25113

 Score =  213 bits (542), Expect = 5e-60
 Identities = 114/297 (38%), Positives = 174/297 (58%), Gaps = 8/297 (2%)

Query: 35  LIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94
           L+    L +  +   PNF T  N+  +    S++ ++A GM   + +   DLSV SV+A 
Sbjct: 28  LVVFAVLFIACAIFVPNFATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIAC 87

Query: 95  CGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTM 154
            G   A ++ +   + + V   LL G   G ++G +IAK K+ A I TL TM ++RG+  
Sbjct: 88  AGVTTAVVINLTESLWIGVAAGLLLGVLCGLVNGFVIAKLKINALITTLATMQIVRGLAY 147

Query: 155 VYTDGRPISTGFTDTADTFAWFGTGYT--LGIPVPVWLMVVVFAGAWYLLNHTRFGRYVY 212
           + +DG+ +  G  D +    +F  GY    G+P P+WL V        LLN T FGR   
Sbjct: 148 IISDGKAV--GIEDES----FFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTL 201

Query: 213 AVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAA 272
           A+GGNE A RL+G+ V R KI ++ + GL++A+AGII+ SR++S QP   +GYEL  I+A
Sbjct: 202 AIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISA 261

Query: 273 VVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVD 329
            VLGG SL GG G+I   + G LI+G + NA+NLL++S + Q + + +++L AV+ D
Sbjct: 262 CVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFD 318