Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., ribose ABC transporter permease protein (NCBI) from Escherichia coli BW25113

 Score =  462 bits (1188), Expect = e-135
 Identities = 234/322 (72%), Positives = 277/322 (86%), Gaps = 1/322 (0%)

Query: 12  MTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAII 71
           MT  T   R+   +K WL+EQKSLIALL L+ +VS L+PNFFT++NL NIL+QTSVNAI+
Sbjct: 1   MTTQTVSGRR-YFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIM 59

Query: 72  AVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIII 131
           AVGMTLVILT+GIDLSVGS+LAL GA AA++V +EV  LVAV  AL  GAA+GA++G+I+
Sbjct: 60  AVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIV 119

Query: 132 AKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLM 191
           AKG+VQAFIATLV M LLRGVTMVYT+G P++TGFT+ AD F WFG G  LG+P PVW+M
Sbjct: 120 AKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIM 179

Query: 192 VVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVT 251
            +VF  AWY+L+HTR GRY+YA+GGNE+ATRLSGINV+++KI VY++CGLLA+LAGII  
Sbjct: 180 GIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEV 239

Query: 252 SRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSS 311
           +RLSSAQPTAG GYELDAIAAVVLGGTSL GGKGRI+GTLIGALI+GFLNN LNLL VSS
Sbjct: 240 ARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSS 299

Query: 312 YYQMIAKAVVILLAVLVDNKNK 333
           YYQMI KAVVILLAVLVDNK +
Sbjct: 300 YYQMIVKAVVILLAVLVDNKKQ 321