Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components from Enterobacter asburiae PDN3

 Score =  213 bits (542), Expect = 5e-60
 Identities = 121/322 (37%), Positives = 186/322 (57%), Gaps = 9/322 (2%)

Query: 11  TMTNTTSDNRKKLLSKEWLIEQKSLI---ALLFLVVVVSFLNPNFFTVDNLLNILRQTSV 67
           ++T + +   K  LS   + +Q  ++   A LFL   +    PNF T  N+  +    S+
Sbjct: 3   SVTTSGAPKSKSALSFGRIWDQYGMLVVFAALFLACAIFV--PNFATFINMKGLGLAISM 60

Query: 68  NAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAIS 127
           + ++A GM   + +   DLSV SV+A  G   A ++ M   + + V   LL G   G ++
Sbjct: 61  SGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINMTESLWIGVLAGLLLGVISGLVN 120

Query: 128 GIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVP 187
           G +IA+ K+ A I TL TM ++RG+  + +DG+ +  G  D  + F   G    LG+P P
Sbjct: 121 GFVIARLKINALITTLATMQIVRGLAYIISDGKAV--GIED--ERFFTLGYANWLGLPAP 176

Query: 188 VWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAG 247
           +WL V       +LLN T FGR   A+GGNE A RL+G+ V R KI ++ + GL++A AG
Sbjct: 177 IWLTVACLILFGFLLNRTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAAAG 236

Query: 248 IIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLL 307
           II+ SR++S QP   +GYEL  I+A VLGG SL GG G+I   + G LI+G + NA+NLL
Sbjct: 237 IILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLL 296

Query: 308 DVSSYYQMIAKAVVILLAVLVD 329
           ++S + Q + + +++L AV+ D
Sbjct: 297 NISPFSQYVVRGLILLAAVIFD 318