Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., L-arabinose ABC transporter permease AraH from Dickeya dianthicola ME23

 Score =  213 bits (541), Expect = 7e-60
 Identities = 120/323 (37%), Positives = 184/323 (56%), Gaps = 5/323 (1%)

Query: 7   MSTRTMTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTS 66
           MST +  +    ++   LS+ W      L+    L +      PNF T  N+  +    S
Sbjct: 1   MSTVSSPSHARKSQGLSLSRIW-DNYGMLVVFAALFLACMLFVPNFATFVNMKGLGLAIS 59

Query: 67  VNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAI 126
           ++ ++A GM   + +   DLSV SV+A  G   A ++ +   + + V   LL G A G +
Sbjct: 60  MSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINVSESLWLGVGAGLLLGVAFGLL 119

Query: 127 SGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPV 186
           +G +IA+ K+ A I TL TM ++RG+  + +DG+ +  G  D  + F   G    LG+P 
Sbjct: 120 NGFVIAQLKINALITTLATMQIVRGLAYIISDGKAV--GIED--ERFFTLGYANWLGLPA 175

Query: 187 PVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALA 246
           P+WL V+       LLN T FGR   A+GGNE A RL+G+ V R KI ++ + GL++A A
Sbjct: 176 PIWLTVICMVLFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFGLSGLVSAAA 235

Query: 247 GIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNL 306
           GII+ SR++S QP   +GYEL  I+A VLGG SL GG G+I   + G LI+G + NA+NL
Sbjct: 236 GIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGVLILGTVENAMNL 295

Query: 307 LDVSSYYQMIAKAVVILLAVLVD 329
           L++S + Q + + +++L AV+ D
Sbjct: 296 LNISPFAQYVVRGLILLAAVVFD 318