Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., sugar ABC transporter permease from Dickeya dianthicola ME23

 Score =  207 bits (528), Expect = 3e-58
 Identities = 135/388 (34%), Positives = 205/388 (52%), Gaps = 63/388 (16%)

Query: 7   MSTRTMTNTTSDN---RKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILR 63
           +S RT     S     R++  + + L+   +++A++     ++  +  + +  N+ N+LR
Sbjct: 6   LSDRTTAPAASSGETPRRRSFNLQVLVMIAAIVAIMLFFTFMT--DGAYLSARNISNLLR 63

Query: 64  QTSVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATL-VAMEVPVLVAVPTALLAGAA 122
           QT++  I+AVGM  VI++A IDLSVGS++ L G  AA L V    P+ + V   LL G  
Sbjct: 64  QTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAILDVWYGWPLPLTVAVTLLLGLL 123

Query: 123 LGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGR---PISTGFTDTADTF------ 173
           LGA +G  +A  +V +FI TL  M   RGV +  T+G    P S   +    ++      
Sbjct: 124 LGAWNGWWVAYRRVPSFIVTLAGMLAFRGVLIGITNGTTVSPTSPAMSQIGQSYLPEGVG 183

Query: 174 ------------AW--------------------------------FGTGYTL----GIP 185
                       AW                                 G  Y L    G+P
Sbjct: 184 FLFGVIGLMLFVAWRWRQRLRRQRLALPVAAASGDVARQSLMAVLVLGAIYLLNDYRGVP 243

Query: 186 VPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAAL 245
            PV L+ ++  G  ++   T FGR +YAVGGN  A RLSG+NV+R K+ V+AI GL+ A+
Sbjct: 244 TPVLLLTLIMLGGMFMAARTAFGRRIYAVGGNIDAARLSGVNVERTKLAVFAINGLMVAV 303

Query: 246 AGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALN 305
           AG++++SRL +  P+AG   ELDAIAA V+GGTSL GG G + G ++GA I+  L+N ++
Sbjct: 304 AGLVLSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNGMS 363

Query: 306 LLDVSSYYQMIAKAVVILLAVLVDNKNK 333
           +LDV +++Q I K  ++LLAV +D   K
Sbjct: 364 MLDVPTFWQYIVKGGILLLAVWMDTATK 391