Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., putative sugar ABC transporter permease from Escherichia coli BL21

 Score =  222 bits (565), Expect = 1e-62
 Identities = 125/324 (38%), Positives = 196/324 (60%), Gaps = 5/324 (1%)

Query: 6   SMSTRTMTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQT 65
           S S+  +    S + K+ +S+  + E   L+ +  L +V S   P F +++N +N+LR  
Sbjct: 2   SASSLPLPQGKSVSLKQFVSRH-INEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDA 60

Query: 66  SVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGA 125
           +   I A  MTL+I++  ID+SVG ++A      A L+  EVP+ VA    LL GA +G 
Sbjct: 61  ATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGT 120

Query: 126 ISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIP 185
           ++G++     V +F+ATL   + LRG+ +  T+  P+     +  D   W G G  LG+P
Sbjct: 121 LAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLD---WLG-GQFLGVP 176

Query: 186 VPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAAL 245
           V   +M+V+FA   ++   T FGR V+AVGGN +A +L GINV RV+I ++ + GLLAA+
Sbjct: 177 VSALIMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAV 236

Query: 246 AGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALN 305
            GI++ +RL S    A  G E D IAAVV+GGT+L GG+G + GTL+G L+I  + N L 
Sbjct: 237 TGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLV 296

Query: 306 LLDVSSYYQMIAKAVVILLAVLVD 329
           LL ++S++Q + + V+I++AVL +
Sbjct: 297 LLGINSFFQQVVRGVIIVVAVLAN 320