Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

 Score =  219 bits (558), Expect = 8e-62
 Identities = 133/307 (43%), Positives = 186/307 (60%), Gaps = 22/307 (7%)

Query: 36  IALLFLVVVVSFLNPNFFTVDNLLNIL-RQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94
           IAL++ ++   F+  +F      L I+  Q SV  IIAVG+T VI+T GIDLS GSV+ L
Sbjct: 35  IALVYEILGWIFIGQSFLLNQQRLTIMILQVSVIGIIAVGVTQVIITGGIDLSSGSVVGL 94

Query: 95  CGAFAATLVAM------------EVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIAT 142
               AA++               ++P  + +   +LAGA  G I+G +IA+ K+  FIAT
Sbjct: 95  TAMLAASVGQSSTWPRALYPGLTDLPFFIPLAVGILAGALAGFINGQLIARTKIPPFIAT 154

Query: 143 LVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLL 202
           L  M   RG++  YT G+PIS G TD    F + GTG     PV V+L+V +       L
Sbjct: 155 LGMMVTARGLSKWYTKGQPIS-GLTDG---FTFIGTGVW---PVVVFLVVAIIFHV--AL 205

Query: 203 NHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAG 262
            +TR+G++ YA+G N+ A R+SGIN++   I VYAI GLLA LAG++  +R  +AQ   G
Sbjct: 206 RYTRYGKFTYAIGANQQAARVSGINIEAHLIKVYAIAGLLAGLAGVVTAARAQTAQAGMG 265

Query: 263 MGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVI 322
           + YELDAIAA V+GGTSL GG GRI GT+IG +I+G + +    L V +YYQ I K ++I
Sbjct: 266 VMYELDAIAAAVIGGTSLAGGAGRITGTVIGTIILGVMTSGFTFLRVDAYYQEIVKGLII 325

Query: 323 LLAVLVD 329
           + AV+ D
Sbjct: 326 VAAVVAD 332