Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  393 bits (1009), Expect = e-114
 Identities = 219/503 (43%), Positives = 324/503 (64%), Gaps = 10/503 (1%)

Query: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAG 60
           M  A L  + I K FPGVKAL + S    P  V ALMGENGAGKSTL+K+L G Y   +G
Sbjct: 1   MIGAALRFNGIGKEFPGVKALSQISFEARPREVHALMGENGAGKSTLLKILGGAYLPSSG 60

Query: 61  SIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMH 120
           +++   Q + FK   DS   G+++IHQEL+L+P++T+AEN+FLG  + + FG +   ++ 
Sbjct: 61  TLQIGEQTMDFKSAADSIACGVAVIHQELHLVPEMTVAENLFLGH-LPTRFGVVNRSQLR 119

Query: 121 RKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETES 180
           ++A   L  L  +      LG LSLG++Q+VEIAKALS  + VI  DEPT +L+  E + 
Sbjct: 120 KQALACLKGLADEIDPDEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDR 179

Query: 181 LFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDT----NEDGLIE 236
           L  +I  LR++G  ++Y+SHR++E+F IC+ +TV +DG+++   R  D     + D L+ 
Sbjct: 180 LMAIITRLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYV---RTFDDMNALSHDQLVT 236

Query: 237 MMVGRKLEEQYPRIAAQQGDISLEVIGLTGSGVHD-VSFTLKKGEILGVSGLMGAGRTEL 295
            MVGR +++ Y     +QG+++L+V GL G G+ + VS  + KGEILG+ GL+GAGRTEL
Sbjct: 237 CMVGRDIQDIYDYRQREQGEVALKVEGLLGPGLREPVSLNVHKGEILGLFGLVGAGRTEL 296

Query: 296 MKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLC 355
            +++ G   S  G + L G+T+   SP+D +A G+    EDRK +G++   SV EN+++ 
Sbjct: 297 FRLLSGLTRSTAGSLALCGQTLQLRSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINIS 356

Query: 356 ALDQLSK-GVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKP 414
           A    S  G  +R   E    D  I+   +KTP+ EQ I  LSGGNQQK  + + L    
Sbjct: 357 ARGAHSTFGWLLRDGWETTNADRQIKAMKVKTPNAEQKIMYLSGGNQQKAILGRWLSMPM 416

Query: 415 KVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRIS 474
           KVL+LDEPTRG+D+GAK EIYQ+I+   A G+++I+VSS++ EV+G+SDRILVM EG ++
Sbjct: 417 KVLLLDEPTRGIDIGAKSEIYQIIHNLAASGIAVIVVSSDLMEVMGISDRILVMSEGALT 476

Query: 475 GEFMASEADQEKLMACAVGRNPA 497
           GE    +AD+ +L+  A+ R+ A
Sbjct: 477 GELTRDQADEARLLQLALPRSRA 499