Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., ribonucleotide-diphosphate reductase subunit alpha from Pseudomonas simiae WCS417

 Score =  393 bits (1010), Expect = e-114
 Identities = 222/495 (44%), Positives = 315/495 (63%), Gaps = 7/495 (1%)

Query: 4   AILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIE 63
           ++L L  I K +PGV+AL   +L V  G + AL+GENGAGKSTLMK+L G+  +D G I 
Sbjct: 3   SLLKLENICKRYPGVQALKSINLQVERGEIHALLGENGAGKSTLMKILGGVEHQDEGQIL 62

Query: 64  YQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKA 123
             GQ   F   RD+  AGI I+ QE +LIP LT  ENIFLG E+++ FG +   EM   +
Sbjct: 63  IDGQAQQFATYRDAIAAGIGIVFQEFSLIPYLTAVENIFLGHELSNRFGLLRKREMVEAS 122

Query: 124 DQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFN 183
           + L  RL V    +  +  LS+ EQQ VEIAKAL+ +++++++DEPT  LT +E E LF 
Sbjct: 123 EALFKRLGVTIDLQCAVKHLSVAEQQFVEIAKALALDARLLVLDEPTATLTPSEAELLFE 182

Query: 184 VINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKL 243
           ++ EL+ QG  +++ISH L+EIF++CD I+VLRDG  +G   V D++ D L+EMMVGR+L
Sbjct: 183 IMRELKRQGVAVIFISHHLEEIFQVCDRISVLRDGGNVGVTDVADSDIDHLVEMMVGRRL 242

Query: 244 EEQY-PRIAAQQGDISLEV--IGLTGSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIY 300
              + P+   ++G + LEV  I L  +G H+  F L KGEILG +GL+G+GRTEL   + 
Sbjct: 243 ACSFPPKPTRERGPLLLEVKDIQLVRNGPHN-RFQLHKGEILGFAGLVGSGRTELALGMM 301

Query: 301 GALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALD-- 358
           GALPS    + L G  +    P   LA+GI  + E RK +GL+   S++EN+SL  L   
Sbjct: 302 GALPSVSKDVWLRGEKITLDDPAQALAHGIGLLPESRKSEGLITDFSIRENISLNNLPKY 361

Query: 359 QLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418
           Q + G+ I    E  +V+  ++  +IK PS E  + NLSGGNQQKV IA+ +     VL+
Sbjct: 362 QNASGL-IDKNRECASVEGLMKQLSIKAPSSESRVFNLSGGNQQKVVIARWINHHCDVLV 420

Query: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFM 478
            DEPTRG+DVGAK +IY L+     +G +II++SSE+PE++GM DR+ V H+G I     
Sbjct: 421 FDEPTRGIDVGAKAQIYALMRSLTEQGYAIIMISSELPEIIGMCDRVAVFHKGAIVKLLE 480

Query: 479 ASEADQEKLMACAVG 493
           AS  + +++M  A G
Sbjct: 481 ASAVNPQEVMRHATG 495



 Score = 87.0 bits (214), Expect = 1e-21
 Identities = 59/226 (26%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 272 VSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIA 331
           ++  +++GEI  + G  GAG++ LMK++ G    + G I ++G+     + +D +A GI 
Sbjct: 23  INLQVERGEIHALLGENGAGKSTLMKILGGVEHQDEGQILIDGQAQQFATYRDAIAAGIG 82

Query: 332 YISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQ 391
            + ++     L+  L+  EN+ L    +LS    +    E++   + +      T   + 
Sbjct: 83  IVFQEFS---LIPYLTAVENIFLG--HELSNRFGLLRKREMVEASEALFKRLGVTIDLQC 137

Query: 392 IIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILV 451
            + +LS   QQ V IAK L    ++L+LDEPT  +     + +++++ + K +G+++I +
Sbjct: 138 AVKHLSVAEQQFVEIAKALALDARLLVLDEPTATLTPSEAELLFEIMRELKRQGVAVIFI 197

Query: 452 SSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRNPA 497
           S  + E+  + DRI V+ +G   G    +++D + L+   VGR  A
Sbjct: 198 SHHLEEIFQVCDRISVLRDGGNVGVTDVADSDIDHLVEMMVGRRLA 243