Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., D-ribose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  384 bits (985), Expect = e-111
 Identities = 216/502 (43%), Positives = 318/502 (63%), Gaps = 14/502 (2%)

Query: 3   QAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKD-AGS 61
           + +L +  I K F G++ L    L VYPG + ALMGENGAGKSTLMK+L+G Y  D  G 
Sbjct: 4   EPLLEMQGISKTFNGLRVLKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADPGGE 63

Query: 62  IEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHR 121
           I   GQ +    P  ++  GI++I+QEL+L P L++AENI+LGRE+   +  I    M  
Sbjct: 64  IRIAGQLIPTFDPATAKALGIAVIYQELSLCPNLSVAENIYLGRELRRGW-TIDRKGMEA 122

Query: 122 KADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESL 181
              ++L RL  + +  T +  LS+ E+Q+VEIA+AL   +K+++MDEPT  L+  ET+ L
Sbjct: 123 GCIEVLQRLGAEFTPATRVSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSRETDRL 182

Query: 182 FNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGR 241
           F +I +LR QG  I+YISHR+ EI+ + D ++VLRDG +IGE      + + L++MMVGR
Sbjct: 183 FALIKQLRSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGELTRDALSAEALVKMMVGR 242

Query: 242 KLEEQYPR--IAAQQGDISLEVIGLT-GSGVHDVSFTLKKGEILGVSGLMGAGRTELMKV 298
            L   Y +   A   G++ + V  +  G  V   SF L  GE+LG++GL+GAGRTEL ++
Sbjct: 243 DLSGFYKKEHAAYNPGNVVMRVRDMADGKRVRHCSFDLHAGEVLGIAGLVGAGRTELARL 302

Query: 299 IYGALPSERGVINLNGRTVNPV-SPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCAL 357
           I+ A P   G + + G+ V P+ +P D +  G+ Y++EDRK  GL L +SV +N+++CA 
Sbjct: 303 IFAADPRTSGTLEVVGKAVTPLRTPADAIRAGVVYLTEDRKAQGLFLDMSVADNINVCAC 362

Query: 358 --DQLSKGVQIR-HADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKP 414
             D  + GV  R HA  +   +D I+  +I+  S +   G LSGGNQQKV +A+ L  KP
Sbjct: 363 VPDAHAGGVLDRDHA--LQRSNDAIKSLSIRVASGKVNAGALSGGNQQKVLLARLLEVKP 420

Query: 415 KVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRIS 474
            VLILDEPTRGVD+G+K EIY++INQ    G+ I+++SSE+PE++G  DR+L+M EG++ 
Sbjct: 421 HVLILDEPTRGVDIGSKSEIYRIINQLAQAGIGIVVISSELPEIIGTCDRVLIMREGQLV 480

Query: 475 GEFMASEA---DQEKLMACAVG 493
            E   +      QE+++  A G
Sbjct: 481 AEVGGASGQAISQERIIDLATG 502



 Score = 97.4 bits (241), Expect = 1e-24
 Identities = 72/226 (31%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 272 VSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERG-VINLNGRTVNPVSPQDGLANGI 330
           V   +  GEI  + G  GAG++ LMK++ GA  ++ G  I + G+ +    P    A GI
Sbjct: 25  VGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADPGGEIRIAGQLIPTFDPATAKALGI 84

Query: 331 AYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQI-RHADEVIAVDDFIRLFNIKTPSR 389
           A I ++     L   LSV EN+ L    +L +G  I R   E   ++   RL    TP+ 
Sbjct: 85  AVIYQELS---LCPNLSVAENIYLGR--ELRRGWTIDRKGMEAGCIEVLQRLGAEFTPAT 139

Query: 390 EQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSII 449
              + +LS   +Q V IA+ L    K+L++DEPT  +       ++ LI Q +++G++II
Sbjct: 140 R--VSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSRETDRLFALIKQLRSQGLAII 197

Query: 450 LVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRN 495
            +S  M E+  +SDR+ V+ +G   GE        E L+   VGR+
Sbjct: 198 YISHRMAEIYALSDRVSVLRDGHYIGELTRDALSAEALVKMMVGRD 243