Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., xylose transporter from Pseudomonas simiae WCS417

 Score =  396 bits (1018), Expect = e-115
 Identities = 219/507 (43%), Positives = 323/507 (63%), Gaps = 12/507 (2%)

Query: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDA- 59
           M+  +L ++ I K+F GV AL+   + V PG  + L GENGAGKSTLMKVL+ +Y     
Sbjct: 4   MSDYLLQMNGIVKSFGGVNALNGIDIRVRPGECVGLCGENGAGKSTLMKVLSAVYPYGTW 63

Query: 60  -GSIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDE 118
            G I + GQP+  +   +++ AGI IIHQEL L+P L++AENIF+G E+T P GR+ +  
Sbjct: 64  EGEILWDGQPLKAQSISETEAAGIVIIHQELTLVPDLSVAENIFMGHELTLPGGRMNYPA 123

Query: 119 MHRKADQLLARLNVKHSAKTL-LGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTE 177
           M  +A+ L+  L V      L + +   G QQ+VEIAKAL+ +++++I+DEP+ ALT +E
Sbjct: 124 MFHRAEALMRELKVPDMNVALPVSQYGGGYQQLVEIAKALNKQARLLILDEPSSALTRSE 183

Query: 178 TESLFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEM 237
            E L ++I  L+ +G   VYISH+L E+  +CD I V+RDGK I    + D +   +I  
Sbjct: 184 IEVLLDIIRGLKAKGVACVYISHKLDEVAAVCDTIAVIRDGKHIATTAMADMDIAKIITQ 243

Query: 238 MVGRKLEEQYPRIAAQQGDISLEVIGLT--------GSGVHDVSFTLKKGEILGVSGLMG 289
           MVGR++   YP      G++  E   +T           V DVSF LK+GEILG++GL+G
Sbjct: 244 MVGREMSNLYPTEPHAVGEVIFEARNVTCHDVDNPKRKRVDDVSFVLKRGEILGIAGLVG 303

Query: 290 AGRTELMKVIYGALPSERGV-INLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSV 348
           AGRTEL+  ++GA P      + L+G+ ++  +P   +  G+  + EDRK  G++  L V
Sbjct: 304 AGRTELVSALFGAYPGRYSAEVWLDGQVIDTRTPLKSIRAGLCMVPEDRKRQGIIPDLGV 363

Query: 349 KENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAK 408
            +N++L  LD  +   +I    E+ ++D  I   ++KT S    I +LSGGNQQK  +AK
Sbjct: 364 GQNITLTVLDSYAHRTRIDAEAELGSIDQQIARMHLKTASTFLPITSLSGGNQQKAVLAK 423

Query: 409 GLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVM 468
            LM KPKVLILDEPTRGVDVGAK EIY+L+    AEG++II+VSSE+ EVLG+SDR+LV+
Sbjct: 424 MLMAKPKVLILDEPTRGVDVGAKYEIYKLMGALAAEGVAIIMVSSELAEVLGVSDRVLVI 483

Query: 469 HEGRISGEFMASEADQEKLMACAVGRN 495
            +G++ G+F+     QE+++A A+ ++
Sbjct: 484 GDGQLRGDFINEGLTQEQVLAAALSQH 510