Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  388 bits (996), Expect = e-112
 Identities = 212/495 (42%), Positives = 312/495 (63%), Gaps = 6/495 (1%)

Query: 4   AILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIE 63
           A+L L  I K F   +AL      ++ G + AL GENGAGKSTLM ++ GI+  D G   
Sbjct: 6   ALLELKGISKRFGASRALTGVDFTLHAGEIHALCGENGAGKSTLMNIIDGIHQPDEGETS 65

Query: 64  YQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKA 123
             G+ V   GP  +   GI ++HQE+ L    T+AENIF+          + +  ++ +A
Sbjct: 66  LDGRKVVIDGPAHAMRLGIGLVHQEIALCGDATVAENIFMPEINAGKHAWMNYASLNERA 125

Query: 124 DQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFN 183
            ++L RL        L+ +LS+  QQ++EIAKAL+ + KV+I+DEPT ALTD E+ +LF 
Sbjct: 126 ARVLQRLGQDVDPAALVKDLSISTQQLIEIAKALTLDCKVLILDEPTAALTDNESAALFK 185

Query: 184 VINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKL 243
           V+++L+ QG GI+YISHR+ EIF  C  +TVLRDG+ +    + + + D L+  MVGR L
Sbjct: 186 VLHDLKAQGIGIIYISHRMAEIFAHCSRVTVLRDGRNVHCGPLAELDADALVRRMVGRDL 245

Query: 244 EEQYP--RIAAQQGDISLEVIGLT-GSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIY 300
              YP     A  G+  LEV  +  G  VH VSFTL++GEILG++GLMGAGR+EL + + 
Sbjct: 246 GNYYPPKHGDAAHGEPVLEVSDIADGERVHGVSFTLRRGEILGIAGLMGAGRSELAETVC 305

Query: 301 GALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQL 360
           G   + RG + L GRT+      D L  GIAY+SEDRK  G+ L L + +N++  AL ++
Sbjct: 306 GLRTATRGAVRLRGRTLAIRKYSDALREGIAYLSEDRKAAGVYLDLPIAQNIASMALRRV 365

Query: 361 SK--GVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418
           S   G+  R A+  +A+D   +L  +K+   +  + +LSGGNQQKVAIAK L T P VL+
Sbjct: 366 SSRFGLLQRAAERKLALDLGGKL-KLKSDGVDIDVASLSGGNQQKVAIAKLLATNPSVLL 424

Query: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFM 478
           +DEPTRGVDVGAK EI+ ++ +  ++G+ ++++SSE+PE++G+ DR LV+ +GR++GE  
Sbjct: 425 MDEPTRGVDVGAKSEIHHILRELASQGVGVVVISSELPEIIGLCDRALVIRDGRLAGEVQ 484

Query: 479 ASEADQEKLMACAVG 493
            +E  +E L+  A G
Sbjct: 485 DNEMTEEALLRLASG 499



 Score =  101 bits (251), Expect = 7e-26
 Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 25  SLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVSFKGPRDSQLAGISI 84
           S  +  G ++ + G  GAG+S L + + G+ +   G++  +G+ ++ +   D+   GI+ 
Sbjct: 278 SFTLRRGEILGIAGLMGAGRSELAETVCGLRTATRGAVRLRGRTLAIRKYSDALREGIAY 337

Query: 85  IHQE---LNLIPQLTIAENI--FLGREMTSPFGRILWDEMHRKADQLLARLNVKHSAKTL 139
           + ++     +   L IA+NI     R ++S FG +      + A  L  +L +K     +
Sbjct: 338 LSEDRKAAGVYLDLPIAQNIASMALRRVSSRFGLLQRAAERKLALDLGGKLKLKSDGVDI 397

Query: 140 -LGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINELREQGCGIVYI 198
            +  LS G QQ V IAK L+    V++MDEPT  +       + +++ EL  QG G+V I
Sbjct: 398 DVASLSGGNQQKVAIAKLLATNPSVLLMDEPTRGVDVGAKSEIHHILRELASQGVGVVVI 457

Query: 199 SHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLEE 245
           S  L EI  +CD   V+RDG+  GE +  +  E+ L+ +  G   EE
Sbjct: 458 SSELPEIIGLCDRALVIRDGRLAGEVQDNEMTEEALLRLASGLCEEE 504