Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., Arabinose import ATP-binding protein AraG from Pseudomonas sp. DMC3

 Score =  389 bits (1000), Expect = e-112
 Identities = 218/495 (44%), Positives = 319/495 (64%), Gaps = 4/495 (0%)

Query: 6   LALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQ 65
           L  + I K FPGVKALD  S   +PG+V ALMGENGAGKSTL+K+L G Y   +G ++  
Sbjct: 17  LRFNGIGKTFPGVKALDGISFVAHPGQVHALMGENGAGKSTLLKILGGAYIPSSGELQIG 76

Query: 66  GQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKADQ 125
            Q ++FK   DS  +G+++IHQEL+L+P++T+AEN+FLG  + + FG I   E+ +KA  
Sbjct: 77  EQAMAFKSTADSIGSGVAVIHQELHLVPEMTVAENLFLGH-LPASFGLINRSELRQKALN 135

Query: 126 LLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVI 185
            L  L  +   +T +G LSLG++Q+VEIAKALS  + VI  DEPT +L+  E + L  +I
Sbjct: 136 CLKGLADEIDPQTKVGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 195

Query: 186 NELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECR-VCDTNEDGLIEMMVGRKLE 244
             LR++G  ++Y+SHR++E+F ICD +TV +DG+++     +     D L+  MVGR ++
Sbjct: 196 GRLRDEGKVVLYVSHRMEEVFRICDAVTVFKDGRYVRTFEDMSQLTHDQLVTCMVGRDIQ 255

Query: 245 EQYPRIAAQQGDISLEVIGLTGSGVHD-VSFTLKKGEILGVSGLMGAGRTELMKVIYGAL 303
           + Y      +G ++L+V GL G G+ + +SF   KGEILG+ GL+GAGRTEL +++ G  
Sbjct: 256 DIYDYRNRPRGAVALKVDGLLGPGLREPISFEAHKGEILGLFGLVGAGRTELFRLLSGLE 315

Query: 304 PSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSK- 362
            +  G + L G  +   SP+D +A GI    EDRK +G++   SV EN+++ A    S  
Sbjct: 316 RNTAGRLELRGHELKLRSPRDAIAAGILLCPEDRKKEGIIPLASVAENINISARGAHSGL 375

Query: 363 GVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEP 422
           G  IR   E    D  I+   +KTP   Q I  LSGGNQQK  + + L    KVL+LDEP
Sbjct: 376 GCLIRGLWEKGNADKQIKALKVKTPHAGQQIKFLSGGNQQKAILGRWLSMPMKVLLLDEP 435

Query: 423 TRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEA 482
           TRG+D+GAK EIYQ+I+   A+G+S+I+VSS++ EV+G+SDRILV+ EG + GE    +A
Sbjct: 436 TRGIDIGAKAEIYQIIHNLAADGISVIVVSSDLMEVMGISDRILVLCEGALRGEVSRDQA 495

Query: 483 DQEKLMACAVGRNPA 497
           ++  L+  A+ R+ A
Sbjct: 496 NESNLLQLALPRHRA 510