Pairwise Alignments
Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056
Subject, 525 a.a., sugar ABC transporter ATP-binding protein from Paraburkholderia sabiae LMG 24235
Score = 382 bits (981), Expect = e-110
Identities = 198/486 (40%), Positives = 322/486 (66%), Gaps = 9/486 (1%)
Query: 11 IEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVS 70
I+ +F GV AL A+L+V G V AL+G+NGAGKST++K+LTG Y + GS+ ++G+ +
Sbjct: 4 IDISFGGVPALRGANLSVAAGEVHALIGQNGAGKSTMIKILTGAYRRSGGSVRFEGREID 63
Query: 71 FKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKADQLLARL 130
F+ P++++ AGIS I+QE+NL+P ++AENIFLGRE FG I W E+ ++A LL
Sbjct: 64 FRTPKEAREAGISTIYQEINLVPFRSVAENIFLGREPRR-FGLIDWREVQKRASALLESF 122
Query: 131 NVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINELRE 190
++ + G S QQMV +A+A+S ++K++IMDE T +L + E E LF V+ +LR+
Sbjct: 123 GLQIDVRKPAGSYSTAIQQMVALARAVSSDAKMVIMDESTSSLDEREVELLFTVVRKLRD 182
Query: 191 QGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKL-----EE 245
G ++++SHRL E++ +CD +TV+RDG+ + + + D ++ L+ M+GR L ++
Sbjct: 183 DGRAVIFVSHRLDELYALCDRVTVMRDGQTVAQSAMKDIDKRQLVTTMLGRTLAAVVQDD 242
Query: 246 QYPRIA--AQQGDISLEVIGLTGSG-VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGA 302
R A A++GD ++ L+ V DVS + GE +G++GL+G+GRTE M++++GA
Sbjct: 243 SAAREANLARRGDKAISARNLSAHPKVSDVSLDVHAGEAVGLAGLLGSGRTETMRLLFGA 302
Query: 303 LPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSK 362
+E+G +++NG V SPQD +A G+AY++EDRK +G+V LSV++N++L L LSK
Sbjct: 303 DAAEKGALSINGENVALKSPQDAIARGLAYLTEDRKAEGIVPDLSVRDNLTLVCLRTLSK 362
Query: 363 GVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEP 422
+ + V+ FI IK S +Q I LSGGNQQKV +A+ L +P +L+LDEP
Sbjct: 363 HGVVDVKKQQAIVERFIASLGIKLRSPDQPIRELSGGNQQKVLLARWLAAQPSLLLLDEP 422
Query: 423 TRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEA 482
TRG+DVGAK ++ +++ + + EGM+++L +SE+ E+ ++DR +V+ +GR E ++
Sbjct: 423 TRGIDVGAKADVAKIVRELRDEGMAVLLSASELEELTAVADRAVVIRDGRTVAELDGAQM 482
Query: 483 DQEKLM 488
+ +M
Sbjct: 483 SESAIM 488
Score = 94.0 bits (232), Expect = 1e-23
Identities = 55/217 (25%), Positives = 116/217 (53%), Gaps = 5/217 (2%)
Query: 25 SLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVSFKGPRDSQLAGISI 84
SL+V+ G + L G G+G++ M++L G + + G++ G+ V+ K P+D+ G++
Sbjct: 273 SLDVHAGEAVGLAGLLGSGRTETMRLLFGADAAEKGALSINGENVALKSPQDAIARGLAY 332
Query: 85 IHQELN---LIPQLTIAENIFLGREMT-SPFGRILWDEMHRKADQLLARLNVK-HSAKTL 139
+ ++ ++P L++ +N+ L T S G + + ++ +A L +K S
Sbjct: 333 LTEDRKAEGIVPDLSVRDNLTLVCLRTLSKHGVVDVKKQQAIVERFIASLGIKLRSPDQP 392
Query: 140 LGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINELREQGCGIVYIS 199
+ ELS G QQ V +A+ L+ + ++++DEPT + + ++ ELR++G ++ +
Sbjct: 393 IRELSGGNQQKVLLARWLAAQPSLLLLDEPTRGIDVGAKADVAKIVRELRDEGMAVLLSA 452
Query: 200 HRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIE 236
L+E+ + D V+RDG+ + E +E +++
Sbjct: 453 SELEELTAVADRAVVIRDGRTVAELDGAQMSESAIMD 489
Score = 81.3 bits (199), Expect = 8e-20
Identities = 54/227 (23%), Positives = 116/227 (51%), Gaps = 10/227 (4%)
Query: 273 SFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIAY 332
+ ++ GE+ + G GAG++ ++K++ GA G + GR ++ +P++ GI+
Sbjct: 18 NLSVAAGEVHALIGQNGAGKSTMIKILTGAYRRSGGSVRFEGREIDFRTPKEAREAGIST 77
Query: 333 ISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIA--VDDFIRLFNIKTPSRE 390
I ++ LV SV EN+ L + + R + + ++ F +++ P+
Sbjct: 78 IYQEIN---LVPFRSVAENIFLGREPRRFGLIDWREVQKRASALLESFGLQIDVRKPA-- 132
Query: 391 QIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIIL 450
G+ S QQ VA+A+ + + K++I+DE T +D + ++ ++ + + +G ++I
Sbjct: 133 ---GSYSTAIQQMVALARAVSSDAKMVIMDESTSSLDEREVELLFTVVRKLRDDGRAVIF 189
Query: 451 VSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRNPA 497
VS + E+ + DR+ VM +G+ + + D+ +L+ +GR A
Sbjct: 190 VSHRLDELYALCDRVTVMRDGQTVAQSAMKDIDKRQLVTTMLGRTLA 236