Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., ribose ABC transporter ATP-binding protein RbsA from Pectobacterium carotovorum WPP14

 Score =  699 bits (1803), Expect = 0.0
 Identities = 361/493 (73%), Positives = 416/493 (84%), Gaps = 1/493 (0%)

Query: 3   QAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSI 62
           Q +L L  I K+FPGVKAL  A+LNVYPG+VMAL+GENGAGKST+MKVLTGIY KDAGSI
Sbjct: 2   QPLLQLQGITKSFPGVKALSGAALNVYPGKVMALVGENGAGKSTMMKVLTGIYRKDAGSI 61

Query: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRK 122
            + GQ V F GP+ SQ AGI IIHQELNLIPQLTIAENIFLGRE T+ FGRI W++M+ +
Sbjct: 62  HFLGQEVDFSGPKASQEAGIGIIHQELNLIPQLTIAENIFLGREFTNRFGRIDWNKMYAE 121

Query: 123 ADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLF 182
           AD+LL RLN+++ ++ ++G+LS+G+QQMVEIAK LSFESKVIIMDEPTDALTDTET SLF
Sbjct: 122 ADKLLKRLNLRYDSRRMVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETASLF 181

Query: 183 NVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRK 242
           +VI EL+ QGCGIVYISHRLKEIFEICDDITV RDG+FIGE  V D  ED LIEMMVGRK
Sbjct: 182 SVIKELQSQGCGIVYISHRLKEIFEICDDITVFRDGQFIGERPVSDLEEDTLIEMMVGRK 241

Query: 243 LEEQYPRIAAQQGDISLEVIGLTGSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGA 302
           LE+QYPR +   G++ L+V  L+G GV  VSFT++KGEILGV+GLMGAGRTELMK++YGA
Sbjct: 242 LEDQYPRSSKVPGEVRLKVQNLSGPGVERVSFTVRKGEILGVAGLMGAGRTELMKILYGA 301

Query: 303 LPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLS- 361
           LP   G + L+GR V    PQDGLANGI YISEDRK DGLVLG+SVKENMSL AL   S 
Sbjct: 302 LPRTGGNVTLDGRDVVTRKPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSH 361

Query: 362 KGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDE 421
            G +++HA+E + V DFIRLFN+KTPS EQ IG LSGGNQQKVAIA+GLMT+P VLILDE
Sbjct: 362 AGGRLKHAEEQLTVADFIRLFNVKTPSMEQPIGLLSGGNQQKVAIARGLMTRPNVLILDE 421

Query: 422 PTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASE 481
           PTRGVDVGAKKEIYQLINQFK EG+SIILVSSEMPEVLGMSDRI+VMHEGR+SG+F   +
Sbjct: 422 PTRGVDVGAKKEIYQLINQFKEEGLSIILVSSEMPEVLGMSDRIIVMHEGRLSGDFPIEQ 481

Query: 482 ADQEKLMACAVGR 494
           A QE LMA AVG+
Sbjct: 482 ATQEALMAAAVGK 494



 Score =  102 bits (254), Expect = 3e-26
 Identities = 66/233 (28%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 16  PGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVSFKGPR 75
           PGV   ++ S  V  G ++ + G  GAG++ LMK+L G   +  G++   G+ V  + P+
Sbjct: 266 PGV---ERVSFTVRKGEILGVAGLMGAGRTELMKILYGALPRTGGNVTLDGRDVVTRKPQ 322

Query: 76  DSQLAGISIIHQELN---LIPQLTIAENIFLG--REMTSPFGRILWDEMHRKADQLLARL 130
           D    GI  I ++     L+  +++ EN+ L   R  +   GR+   E        +   
Sbjct: 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSHAGGRLKHAEEQLTVADFIRLF 382

Query: 131 NVKH-SAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINELR 189
           NVK  S +  +G LS G QQ V IA+ L     V+I+DEPT  +     + ++ +IN+ +
Sbjct: 383 NVKTPSMEQPIGLLSGGNQQKVAIARGLMTRPNVLILDEPTRGVDVGAKKEIYQLINQFK 442

Query: 190 EQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRK 242
           E+G  I+ +S  + E+  + D I V+ +G+  G+  +    ++ L+   VG++
Sbjct: 443 EEGLSIILVSSEMPEVLGMSDRIIVMHEGRLSGDFPIEQATQEALMAAAVGKQ 495