Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., xylose ABC transporter ATP-binding protein from Serratia liquefaciens MT49

 Score =  410 bits (1054), Expect = e-119
 Identities = 226/500 (45%), Positives = 329/500 (65%), Gaps = 13/500 (2%)

Query: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDA--GSI 62
           +L +  I   F  VKA+D  SL +  G+V++L GENG+GKSTLMKVL GIY   +  G I
Sbjct: 4   LLEMKNITMQFGAVKAVDNVSLKLEAGQVLSLCGENGSGKSTLMKVLCGIYPHGSYQGDI 63

Query: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRK 122
            +    ++ K  RD++  GI+IIHQEL L+ Q+T+ EN+FLG E    +G + +D M+ +
Sbjct: 64  YFSDDLLTAKNIRDTEQKGIAIIHQELALVKQMTVLENMFLGNEWRR-YGVMDYDAMYLR 122

Query: 123 ADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLF 182
             ++LA++ ++    T +GEL LG+QQ+VEIAKAL+ + +++++DEPT +LT++ET +L 
Sbjct: 123 CRRMLAQVKLEVDPNTPIGELGLGQQQLVEIAKALNKQVRLLVLDEPTASLTESETATLL 182

Query: 183 NVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRK 242
            +I +LR+ G   +YISH+L E+  I D I V+RDGK IG     + +ED +I MMVGR+
Sbjct: 183 AIIGDLRDHGIACIYISHKLNEVKAISDLICVIRDGKHIGTGPAAEMSEDDIIAMMVGRE 242

Query: 243 LEEQYPRIAAQQGDISLEVIGLTG--------SGVHDVSFTLKKGEILGVSGLMGAGRTE 294
           L E YP+   + G++ L+V  LT           V DVSF+L++GEILGV+GL+G+GRTE
Sbjct: 243 LTELYPQQQHEIGEVILQVDNLTAWHPVNRQVRRVDDVSFSLRRGEILGVAGLVGSGRTE 302

Query: 295 LMKVIYGALPSE-RGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMS 353
            M+ ++G  P   +G I LNG+     + +  +  GIA + EDRK +G+V  + V  NM+
Sbjct: 303 TMQCLFGVYPGRWQGSITLNGQPATINNCRQAMRYGIAMVPEDRKREGIVPVMGVGANMT 362

Query: 354 LCALDQLSKGVQ-IRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMT 412
           L AL   S  +  I  A E   +   +    +KT S E  I  LSGGNQQK  +AK L+ 
Sbjct: 363 LAALSDFSGMLTVIDDAHEQATIRQSLAQLRVKTSSPELAIARLSGGNQQKAILAKCLLL 422

Query: 413 KPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGR 472
           KPK+LILDEPTRG+D+GAK+EIY+LINQ   +G+++I+VSSE+PEVLG+SDR+LVMH+GR
Sbjct: 423 KPKILILDEPTRGIDIGAKQEIYKLINQLVQQGIAVIVVSSELPEVLGLSDRVLVMHQGR 482

Query: 473 ISGEFMASEADQEKLMACAV 492
           I    +     QE++M  A+
Sbjct: 483 IKASLINRGLTQEQVMEAAL 502



 Score = 85.5 bits (210), Expect = 4e-21
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 18/233 (7%)

Query: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALP--SERGVINLNGRTVNPVSPQDGL 326
           V +VS  L+ G++L + G  G+G++ LMKV+ G  P  S +G I  +   +   + +D  
Sbjct: 20  VDNVSLKLEAGQVLSLCGENGSGKSTLMKVLCGIYPHGSYQGDIYFSDDLLTAKNIRDTE 79

Query: 327 ANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKT 386
             GIA I ++     LV  ++V ENM L        G + R    +     ++R   +  
Sbjct: 80  QKGIAIIHQEL---ALVKQMTVLENMFL--------GNEWRRYGVMDYDAMYLRCRRMLA 128

Query: 387 PSREQI-----IGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQF 441
             + ++     IG L  G QQ V IAK L  + ++L+LDEPT  +       +  +I   
Sbjct: 129 QVKLEVDPNTPIGELGLGQQQLVEIAKALNKQVRLLVLDEPTASLTESETATLLAIIGDL 188

Query: 442 KAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494
           +  G++ I +S ++ EV  +SD I V+ +G+  G   A+E  ++ ++A  VGR
Sbjct: 189 RDHGIACIYISHKLNEVKAISDLICVIRDGKHIGTGPAAEMSEDDIIAMMVGR 241