Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., D-xylose ABC transporter, ATP-binding protein from Enterobacter asburiae PDN3

 Score =  407 bits (1046), Expect = e-118
 Identities = 226/500 (45%), Positives = 325/500 (65%), Gaps = 13/500 (2%)

Query: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDA--GSI 62
           +L +  I K F  VKA+D  SL + PG V++L GENG+GKSTLMKVL GIY   +  G I
Sbjct: 4   LLEMKSITKRFGMVKAVDNVSLRLNPGEVVSLCGENGSGKSTLMKVLCGIYPHGSYEGEI 63

Query: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRK 122
            + G+ +     RD++  GI+IIHQEL L+  LT+ ENIFLG E+ S  G + +D M  +
Sbjct: 64  VFAGEVIQATHIRDTERKGIAIIHQELALVKHLTVLENIFLGAEI-SHRGVLDYDTMTLR 122

Query: 123 ADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLF 182
            ++LLA++++  S  T +G+L LG+QQ+VEIAKAL+ + +++I+DEPT +LT+ ET  L 
Sbjct: 123 CEKLLAQVSLNISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETAVLL 182

Query: 183 NVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRK 242
           N+I +L+  G   +YISH+L E+  I D I V+RDG+ IG       +ED +I MMVGR+
Sbjct: 183 NIIRDLQNHGIACIYISHKLNEVKAISDTICVIRDGQHIGTREAAGMSEDDIITMMVGRE 242

Query: 243 LEEQYPRIAAQQGDISLEVIGLTG--------SGVHDVSFTLKKGEILGVSGLMGAGRTE 294
           L   YP      GD  L V  LT           V++VSF L  GEILG++GL+GAGRTE
Sbjct: 243 LTALYPNEPHATGDEVLRVENLTAWHPVNRHIKRVNNVSFALHSGEILGIAGLVGAGRTE 302

Query: 295 LMKVIYGALPSE-RGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMS 353
            ++ ++G  P    G I ++G+ V   + Q  +A GIA + EDRK DG+V  ++V +N++
Sbjct: 303 AVQCLFGVWPGRWEGTIYIDGQPVKIDNCQQAIARGIAMVPEDRKKDGIVPVMAVGKNIT 362

Query: 354 LCALDQLSKGVQ-IRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMT 412
           L ALD+ S  +  +  A E   +   +    +KT S E  IG LSGGNQQK  +A+ L+ 
Sbjct: 363 LAALDRFSGALSSLDDAAEQQCILQSLARLKVKTSSPELAIGRLSGGNQQKAILARCLLL 422

Query: 413 KPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGR 472
            P++LILDEPTRG+D+GAK EIY+LINQ   +G+++I++SSE+PEVLG+SDR+LVMHEG+
Sbjct: 423 NPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMHEGK 482

Query: 473 ISGEFMASEADQEKLMACAV 492
           +    +     QE++M  A+
Sbjct: 483 LKANLINQNLTQEQVMEAAL 502



 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALP--SERGVINLNGRTVNPVSPQDGL 326
           V +VS  L  GE++ + G  G+G++ LMKV+ G  P  S  G I   G  +     +D  
Sbjct: 20  VDNVSLRLNPGEVVSLCGENGSGKSTLMKVLCGIYPHGSYEGEIVFAGEVIQATHIRDTE 79

Query: 327 ANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKT 386
             GIA I ++     LV  L+V EN+ L A  ++S    + +    +  +  +   ++  
Sbjct: 80  RKGIAIIHQEL---ALVKHLTVLENIFLGA--EISHRGVLDYDTMTLRCEKLLAQVSLNI 134

Query: 387 PSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGM 446
            S +  +G+L  G QQ V IAK L  + ++LILDEPT  +       +  +I   +  G+
Sbjct: 135 -SPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETAVLLNIIRDLQNHGI 193

Query: 447 SIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494
           + I +S ++ EV  +SD I V+ +G+  G   A+   ++ ++   VGR
Sbjct: 194 ACIYISHKLNEVKAISDTICVIRDGQHIGTREAAGMSEDDIITMMVGR 241