Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 506 a.a., ABC-type sugar transport system, ATPase component from Enterobacter asburiae PDN3

 Score =  409 bits (1051), Expect = e-118
 Identities = 214/494 (43%), Positives = 325/494 (65%), Gaps = 11/494 (2%)

Query: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEY 64
           +L +S I K+FPGVKALD  +L V P  + ALMGENGAGKSTL+K L GIY KD+GSI +
Sbjct: 13  LLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 72

Query: 65  QGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKAD 124
           QG+ + F   +++   GIS++HQELNL+ Q ++ +N++LGR  T     +  D+M+R   
Sbjct: 73  QGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGVF-VDQDKMYRDTK 131

Query: 125 QLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNV 184
            +   L++    +  +G LS+ + QM+EIAKA S+++K++IMDEPT +LT+ E   LF +
Sbjct: 132 AIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYDAKIVIMDEPTSSLTEKEVNHLFTI 191

Query: 185 INELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLE 244
           I +L+++GCGIVYISH+++EIF++CD+IT+LRDG++I    +   + D +I MMVGR L 
Sbjct: 192 IRKLKDRGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLEGLDMDKIIAMMVGRSLN 251

Query: 245 EQYPRIAAQQGDISLEVIGLTG---SGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYG 301
           +++P    + G++ LEV  LT      + DVSF L KGEILG++GL+GA RT++++ ++G
Sbjct: 252 QRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG 311

Query: 302 ALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLS 361
                +G I L+G+ +N  +  + + NG A ++E+R+  G+   L +  N  +  +    
Sbjct: 312 IREKAQGTITLHGKKINNHNANEAINNGFALVTEERRSTGIYAYLDINFNSLISNIRNYK 371

Query: 362 KGVQI----RHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVL 417
             V +    R   +   V D +R   +KTP     IG+LSGGNQQKV I + L+T+P++L
Sbjct: 372 NKVGLLDNSRMKSDTQWVIDSMR---VKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEIL 428

Query: 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477
           +LDEPTRG+DVGAK EIYQLI +   +   II++SSEMPE+LG++DRILVM  G ++G  
Sbjct: 429 MLDEPTRGIDVGAKFEIYQLIAELAKKNKGIIIISSEMPELLGITDRILVMSNGLVAGIV 488

Query: 478 MASEADQEKLMACA 491
                 Q +++  A
Sbjct: 489 DTKTTTQNEILRLA 502



 Score = 88.2 bits (217), Expect = 6e-22
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 11/246 (4%)

Query: 255 GDISLEVIGLTGS-----GVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGV 309
           G+  LE+ G+  S      + +V+  ++   I  + G  GAG++ L+K ++G    + G 
Sbjct: 10  GEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS 69

Query: 310 INLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHA 369
           I   G+ ++  S ++ L NGI+ + ++     LVL  SV +NM L      +KGV +   
Sbjct: 70  ILFQGKEIDFHSAKEALENGISMVHQELN---LVLQRSVMDNMWLGRYP--TKGVFVDQD 124

Query: 370 DEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVG 429
                        +I    R ++ G LS    Q + IAK      K++I+DEPT  +   
Sbjct: 125 KMYRDTKAIFDELDIDIDPRARV-GTLSVSQMQMIEIAKAFSYDAKIVIMDEPTSSLTEK 183

Query: 430 AKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMA 489
               ++ +I + K  G  I+ +S +M E+  + D I ++ +G+          D +K++A
Sbjct: 184 EVNHLFTIIRKLKDRGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLEGLDMDKIIA 243

Query: 490 CAVGRN 495
             VGR+
Sbjct: 244 MMVGRS 249