Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., D-xylose ABC transporter ATP-binding protein from Escherichia coli ECRC62

 Score =  410 bits (1055), Expect = e-119
 Identities = 223/500 (44%), Positives = 333/500 (66%), Gaps = 13/500 (2%)

Query: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDA--GSI 62
           +L +  I K F  VKA+D   L +  G +++L GENG+GKSTLMKVL GIY   +  G I
Sbjct: 4   LLEMKNITKTFGSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYEGEI 63

Query: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRK 122
            + G+ +     RD++  GI+IIHQEL L+ +LT+ ENIFLG E+T   G + +D M  +
Sbjct: 64  IFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHN-GIMDYDLMTLR 122

Query: 123 ADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLF 182
             +LLA++++  S  T +G+L LG+QQ+VEIAKAL+ + +++I+DEPT +LT+ ET  L 
Sbjct: 123 CQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSVLL 182

Query: 183 NVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRK 242
           ++I +L++ G   +YISH+L E+  I D I V+RDG+ IG       +ED +I MMVGR+
Sbjct: 183 DIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSEDDIITMMVGRE 242

Query: 243 LEEQYPRIAAQQGDISLEVIGLTG--------SGVHDVSFTLKKGEILGVSGLMGAGRTE 294
           L   YP      GD  L +  LT           V+DVSF+LK+GEILG++GL+GAGRTE
Sbjct: 243 LTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGIAGLVGAGRTE 302

Query: 295 LMKVIYGALPSE-RGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMS 353
            ++ ++G  P +  G I ++G+ V+  + Q  +A GIA + EDRK DG+V  ++V +N++
Sbjct: 303 TIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQAIAQGIAMVPEDRKRDGIVPVMAVGKNIT 362

Query: 354 LCALDQLSKGV-QIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMT 412
           L AL++ + G+ Q+  A E   + + I+   +KT S +  IG LSGGNQQK  +A+ L+ 
Sbjct: 363 LAALNKFTGGISQLDDAAEQKCILESIQQLKVKTSSPDLAIGRLSGGNQQKAILARCLLL 422

Query: 413 KPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGR 472
            P++LILDEPTRG+D+GAK EIY+LINQ   +G+++I++SSE+PEVLG+SDR+LVMHEG+
Sbjct: 423 NPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMHEGK 482

Query: 473 ISGEFMASEADQEKLMACAV 492
           +    +     QE++M  A+
Sbjct: 483 LKANLINHNLTQEQVMEAAL 502



 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 22/235 (9%)

Query: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALP--SERGVINLNGRTVNPVSPQDGL 326
           + +V   L  GEI+ + G  G+G++ LMKV+ G  P  S  G I   G  +     +D  
Sbjct: 20  IDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTE 79

Query: 327 ANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKT 386
             GIA I ++     LV  L+V EN+ L        G +I H    I   D + L   K 
Sbjct: 80  RKGIAIIHQEL---ALVKELTVLENIFL--------GNEITHNG--IMDYDLMTLRCQKL 126

Query: 387 PSREQI-------IGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLIN 439
            ++  +       +G+L  G QQ V IAK L  + ++LILDEPT  +       +  +I 
Sbjct: 127 LAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSVLLDIIR 186

Query: 440 QFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494
             +  G++ I +S ++ EV  +SD I V+ +G+  G   A+   ++ ++   VGR
Sbjct: 187 DLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSEDDIITMMVGR 241