Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., ribose ABC transporter ATP-binding protein RbsA from Dickeya dianthicola ME23

 Score =  693 bits (1788), Expect = 0.0
 Identities = 360/493 (73%), Positives = 410/493 (83%), Gaps = 1/493 (0%)

Query: 3   QAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSI 62
           Q +L L  I K FPGVKAL  A+LNVYPG+VMAL+GENGAGKST+MKVLTGIY KDAGSI
Sbjct: 2   QPLLQLQGITKTFPGVKALSGAALNVYPGKVMALVGENGAGKSTMMKVLTGIYRKDAGSI 61

Query: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRK 122
            + G+ V F GP+ SQ AGI IIHQELNLIPQLTIAENIFLGRE T+  GRI W  M+ +
Sbjct: 62  HFLGKDVDFSGPKASQEAGIGIIHQELNLIPQLTIAENIFLGREFTNRLGRIDWKRMYAE 121

Query: 123 ADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLF 182
           AD+LL RLN+++ ++ L+GELS+G+QQMVEIAK LSFES+VIIMDEPTDALTDTET SLF
Sbjct: 122 ADKLLKRLNLRYDSRRLVGELSIGDQQMVEIAKVLSFESQVIIMDEPTDALTDTETASLF 181

Query: 183 NVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRK 242
            VI EL+ QGCGIVYISHRLKEIFEICDD+TV RDG+FIGE  V +  ED LIEMMVGRK
Sbjct: 182 GVIKELQSQGCGIVYISHRLKEIFEICDDVTVFRDGQFIGERPVNELQEDSLIEMMVGRK 241

Query: 243 LEEQYPRIAAQQGDISLEVIGLTGSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGA 302
           LEEQYPR+    G++ L+V  L+G GV +VSFTL KGEILGV+GLMGAGRTELMKV+YGA
Sbjct: 242 LEEQYPRLNQAPGEVRLQVSELSGPGVENVSFTLCKGEILGVAGLMGAGRTELMKVLYGA 301

Query: 303 LPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSK 362
           LP   G ++L+G+ V   SPQDGLA+GI YISEDRK DGLVLG+SVKENMSL AL   S 
Sbjct: 302 LPRTHGKVHLDGKDVVTRSPQDGLASGIVYISEDRKHDGLVLGMSVKENMSLTALRYFSN 361

Query: 363 GV-QIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDE 421
               +RH DE  AV DFIR+FNI+TPS  Q IG LSGGNQQKVAIA+GLMT+P+VLILDE
Sbjct: 362 AAGSLRHGDEQQAVSDFIRMFNIRTPSMSQPIGLLSGGNQQKVAIARGLMTRPRVLILDE 421

Query: 422 PTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASE 481
           PTRGVDVGAKKEIYQLINQFK EG+SIILVSSEMPEVLGMSDRI+VMHEGR+SGEF   +
Sbjct: 422 PTRGVDVGAKKEIYQLINQFKQEGLSIILVSSEMPEVLGMSDRIIVMHEGRLSGEFPIEQ 481

Query: 482 ADQEKLMACAVGR 494
           A QE LMA AVG+
Sbjct: 482 ATQETLMAAAVGK 494



 Score =  100 bits (250), Expect = 9e-26
 Identities = 63/237 (26%), Positives = 120/237 (50%), Gaps = 9/237 (3%)

Query: 12  EKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVSF 71
           E + PGV   +  S  +  G ++ + G  GAG++ LMKVL G   +  G +   G+ V  
Sbjct: 262 ELSGPGV---ENVSFTLCKGEILGVAGLMGAGRTELMKVLYGALPRTHGKVHLDGKDVVT 318

Query: 72  KGPRDSQLAGISIIHQELN---LIPQLTIAENIFLG--REMTSPFGRILWDEMHRKADQL 126
           + P+D   +GI  I ++     L+  +++ EN+ L   R  ++  G +   +  +     
Sbjct: 319 RSPQDGLASGIVYISEDRKHDGLVLGMSVKENMSLTALRYFSNAAGSLRHGDEQQAVSDF 378

Query: 127 LARLNVKH-SAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVI 185
           +   N++  S    +G LS G QQ V IA+ L    +V+I+DEPT  +     + ++ +I
Sbjct: 379 IRMFNIRTPSMSQPIGLLSGGNQQKVAIARGLMTRPRVLILDEPTRGVDVGAKKEIYQLI 438

Query: 186 NELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRK 242
           N+ +++G  I+ +S  + E+  + D I V+ +G+  GE  +    ++ L+   VG++
Sbjct: 439 NQFKQEGLSIILVSSEMPEVLGMSDRIIVMHEGRLSGEFPIEQATQETLMAAAVGKQ 495