Pairwise Alignments
Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056
Subject, 515 a.a., sugar ABC transporter ATP-binding protein from Dickeya dianthicola ME23
Score = 389 bits (1000), Expect = e-112
Identities = 209/504 (41%), Positives = 320/504 (63%), Gaps = 18/504 (3%)
Query: 1 MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAG 60
MT+ +LA++ + K F GV AL+K L V PG + AL+GENGAGKSTL+K L G + +G
Sbjct: 1 MTEPLLAITDLAKNFSGVWALNKVQLTVLPGEIHALLGENGAGKSTLLKALAGAQPQTSG 60
Query: 61 SIEYQGQPVSFK-GPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEM 119
I + G+ +S + P + Q GI I+QE NL+P +T+AEN+FLGRE+ + +
Sbjct: 61 DIRFNGELLSPQDSPVERQNRGIVTIYQEFNLLPNMTVAENLFLGRELQRNRLFVDAQAV 120
Query: 120 HRKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETE 179
+++A +L L + S T + LS+ +QQMVEIA+AL+ +++I+MDEP+ AL+D+E
Sbjct: 121 NQEARTVLEYLQLNISPTTQVARLSVAQQQMVEIARALTLNARLIVMDEPSAALSDSEVA 180
Query: 180 SLFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMV 239
SL V+ EL+ +G ++Y++HRL E+F++CD TVL+DG++ G V D + G+I MMV
Sbjct: 181 SLHRVVRELKARGVSVIYVTHRLHEVFQLCDRFTVLQDGRYTGSGNVADIDVAGIIRMMV 240
Query: 240 GRKL---EEQYPRIAAQQGDISLEVIGLT---------GSGVHDVSFTLKKGEILGVSGL 287
GR + Q + L V GL G + ++ F + GEILG++GL
Sbjct: 241 GRDVVFTRRPPSETHHQDKPVRLAVKGLCREKPPLDPHGIALDNIGFQVHTGEILGIAGL 300
Query: 288 MGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLS 347
+GAGRTE+ + ++GA P G L+G+ +PV P L GIA + EDRK +G VLGLS
Sbjct: 301 VGAGRTEMARCLFGADPFTSGEFWLDGQPYHPVDPLHALEQGIALVPEDRKKEGAVLGLS 360
Query: 348 VKENMSLCALDQLSKG---VQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKV 404
++ N+SL +L L + V R D++I + + + IK EQ + LSGGNQQKV
Sbjct: 361 IRNNLSLSSLSSLLRWRYFVDTRREDDLI--ESYRQALRIKMVDSEQEVRKLSGGNQQKV 418
Query: 405 AIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDR 464
+A+ + P+VLI+DEPTRG+DVG K E++Q++ G+++I++SS++PEV+ +SDR
Sbjct: 419 ILARCMALNPRVLIVDEPTRGIDVGTKSEVHQVLFDMAKRGVAVIVISSDLPEVMAVSDR 478
Query: 465 ILVMHEGRISGEFMASEADQEKLM 488
I+ + EGR++GE +A +E+LM
Sbjct: 479 IITLSEGRVTGELHGDDATEERLM 502
Score = 90.9 bits (224), Expect = 1e-22
Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPV-SPQDGLA 327
++ V T+ GEI + G GAG++ L+K + GA P G I NG ++P SP +
Sbjct: 21 LNKVQLTVLPGEIHALLGENGAGKSTLLKALAGAQPQTSGDIRFNGELLSPQDSPVERQN 80
Query: 328 NGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHA--DEVIAVDDFIRLFNIK 385
GI I ++ L+ ++V EN+ L Q ++ A E V ++++L NI
Sbjct: 81 RGIVTIYQEFN---LLPNMTVAENLFLGRELQRNRLFVDAQAVNQEARTVLEYLQL-NIS 136
Query: 386 TPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG 445
++ + LS QQ V IA+ L +++++DEP+ + +++++ + KA G
Sbjct: 137 PTTQ---VARLSVAQQQMVEIARALTLNARLIVMDEPSAALSDSEVASLHRVVRELKARG 193
Query: 446 MSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRN 495
+S+I V+ + EV + DR V+ +GR +G ++ D ++ VGR+
Sbjct: 194 VSVIYVTHRLHEVFQLCDRFTVLQDGRYTGSGNVADIDVAGIIRMMVGRD 243
Score = 77.8 bits (190), Expect = 9e-19
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 10/227 (4%)
Query: 20 ALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVSFKGPRDSQL 79
ALD V+ G ++ + G GAG++ + + L G +G GQP P +
Sbjct: 281 ALDNIGFQVHTGEILGIAGLVGAGRTEMARCLFGADPFTSGEFWLDGQPYHPVDPLHALE 340
Query: 80 AGISIIHQELN---LIPQLTIAENIFLGREMTSPFGRILWDEMHRKADQLLARLNVKHSA 136
GI+++ ++ + L+I N+ L + R D R+ D L+
Sbjct: 341 QGIALVPEDRKKEGAVLGLSIRNNLSLSSLSSLLRWRYFVDT--RREDDLIESYRQALRI 398
Query: 137 KTLLGE-----LSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINELREQ 191
K + E LS G QQ V +A+ ++ +V+I+DEPT + + V+ ++ ++
Sbjct: 399 KMVDSEQEVRKLSGGNQQKVILARCMALNPRVLIVDEPTRGIDVGTKSEVHQVLFDMAKR 458
Query: 192 GCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMM 238
G ++ IS L E+ + D I L +G+ GE D E+ L+ +M
Sbjct: 459 GVAVIVISSDLPEVMAVSDRIITLSEGRVTGELHGDDATEERLMTLM 505