Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., xylose ABC transporter ATP-binding protein from Dickeya dianthicola ME23

 Score =  411 bits (1057), Expect = e-119
 Identities = 226/500 (45%), Positives = 329/500 (65%), Gaps = 13/500 (2%)

Query: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDA--GSI 62
           +L +  I KAF  VKA+D  SL +  G+V++L GENG+GKSTLMKVL  +Y   +  GSI
Sbjct: 4   LLEMKNITKAFGAVKAVDNVSLQLEAGQVLSLCGENGSGKSTLMKVLCAVYPYGSYEGSI 63

Query: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRK 122
            + G  +     RD++  GI+IIHQEL L+ ++T+ ENIFLG E T  FG + +D M+ +
Sbjct: 64  RFAGDALRAGHIRDTEQKGIAIIHQELALVKEMTVLENIFLGNEWTR-FGVMDYDAMYLR 122

Query: 123 ADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLF 182
              +LA++ +     T +GEL LG+QQ+VEIAKAL+ + +++I+DEPT +LT+ ET  L 
Sbjct: 123 CQTMLAQVRLDIDPNTRVGELGLGQQQLVEIAKALNKQVRLLILDEPTASLTERETGVLL 182

Query: 183 NVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRK 242
           +++ +LR  G   +YISH+L E+  I D I V+RDG+ IG C     +ED +I MMVGR+
Sbjct: 183 DIVRDLRHHGIACIYISHKLNEVKAISDVICVIRDGRHIGTCPADSLSEDQIIAMMVGRE 242

Query: 243 LEEQYPRIAAQQGDISLEVIGLTG--------SGVHDVSFTLKKGEILGVSGLMGAGRTE 294
           L   YP      G+  L V  LT           V DVSF+L++GE+LG++GL+GAGRTE
Sbjct: 243 LTALYPNEPHDIGEEVLRVEHLTAWHPVNRHIRRVDDVSFSLRRGEVLGIAGLVGAGRTE 302

Query: 295 LMKVIYGALPSE-RGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMS 353
            ++ ++GA P   +G I + G+ V     +  +A GIA + EDRK DG++  +SV +N++
Sbjct: 303 TVQCLFGAYPGRWQGDIRVEGKPVAIRHCRQAMALGIAMVPEDRKKDGIIPVMSVAQNIT 362

Query: 354 LCALDQLSKGVQI-RHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMT 412
           L ALDQ +  + + R ADE  ++ + I    +KT S E  I  LSGGNQQK  +AK L+ 
Sbjct: 363 LAALDQFAGALSVLRDADEQHSLRESIAHLKVKTASPELAIARLSGGNQQKAILAKCLLL 422

Query: 413 KPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGR 472
           +PK+LILDEPTRG+D+GAK EIY+LINQ   + +++I++SSE+PEVLG+SDR+LVMH+GR
Sbjct: 423 RPKILILDEPTRGIDIGAKYEIYKLINQLVKQQIAVIVISSELPEVLGLSDRVLVMHQGR 482

Query: 473 ISGEFMASEADQEKLMACAV 492
           +  +       QE++M  A+
Sbjct: 483 LKADLPNRGLTQEQVMEAAL 502



 Score = 81.6 bits (200), Expect = 6e-20
 Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 26/237 (10%)

Query: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALP--SERGVINLNGRTVNPVSPQDGL 326
           V +VS  L+ G++L + G  G+G++ LMKV+    P  S  G I   G  +     +D  
Sbjct: 20  VDNVSLQLEAGQVLSLCGENGSGKSTLMKVLCAVYPYGSYEGSIRFAGDALRAGHIRDTE 79

Query: 327 ANGIAYISEDRKGDGLVLGLSVKENMSL---------CALDQLSKGVQIRHADEVIAVDD 377
             GIA I ++     LV  ++V EN+ L            D +    Q   A   + +D 
Sbjct: 80  QKGIAIIHQEL---ALVKEMTVLENIFLGNEWTRFGVMDYDAMYLRCQTMLAQVRLDIDP 136

Query: 378 FIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQL 437
             R            +G L  G QQ V IAK L  + ++LILDEPT  +       +  +
Sbjct: 137 NTR------------VGELGLGQQQLVEIAKALNKQVRLLILDEPTASLTERETGVLLDI 184

Query: 438 INQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494
           +   +  G++ I +S ++ EV  +SD I V+ +GR  G   A    +++++A  VGR
Sbjct: 185 VRDLRHHGIACIYISHKLNEVKAISDVICVIRDGRHIGTCPADSLSEDQIIAMMVGR 241